Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq5719 91.5 1e-13 >seq5719 Length=28269 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 29876 AGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCC 29935 || || ||||||| | || || || || ||||| || | || | |||||| || Sbjct 20241 AGTGGCTCCACGTGGTTTAGATACACATGTGCGTCACCGATAACATGAATAAACTCGCCA 20182 Query 29936 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29995 |||| ||||| || || ||||| | | | ||| || || | ||||||||| || ||| Sbjct 20181 GGTTTCAGCCCAGTTACTTGAGCAACTAAGCGCGTAAGCAGCGCGTAGCTGGCAATATTA 20122 Query 29996 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG 30055 ||||| || || ||||||||||| | || | ||| || | ||||| || | ||| ||| Sbjct 20121 AAGGGAACTCCAAGCCCCATGTCGGCGGAACGCTGATACATTTGACATGACAACTCACCG 20062 Query 30056 TCGCTCACGTAAAACTGACA 30075 || |||||| || || || Sbjct 20061 TCCGCCACGTAGAATTGGCA 20042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406177758192312