Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq13324 131 1e-25 >seq13324 Length=6237 Score = 131 bits (144), Expect = 1e-25 Identities = 171/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| |||| ||||||||| || || |||||| || ||||| ||||| | | Sbjct 6129 CCACCACGAAGGCGCAGCACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAGCA 6070 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| |||| || ||||| || || ||||| |||| |||||| ||||| ||||| Sbjct 6069 AGCGTACGCCCGTCCTCTAGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCGGA 6010 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||||| | || ||| | ||| ||||| |||||| Sbjct 6009 ATACCTTCCTTGTCTTGAATCTTT-GCCTTCACGTTGTCAATCGTGTCGGACGGCTCCAC 5951 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA-TGTTG 34710 || | || || || || || || | ||||||||||||||||||| ||||| Sbjct 5950 ATCGAGCGTGATTGTCTTGCCCGTCAGTGTTTTCACAAAAATCTGCATTGTTG 5898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314626855145138