Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq13324 158 1e-33 seq18532 116 3e-21 >seq13324 Length=6237 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| ||||| |||||| | || || || || ||||| |||||| Sbjct 5903 ATGCAGATTTTTGTGAAAACACTGACGGGCAAGACAATCACGCTCGATGTGGAGCCGTCC 5962 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || ||| ||||||||||| ||||| || || || || || Sbjct 5963 GACACGATTGACAACGTGAAGGCAAAGATTCAAGACAAGGAAGGTATTCCGCCAGACCAG 6022 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| |||| | || ||||| ||| | || ||| | || || | ||||||||| Sbjct 6023 CAGCGTCTAATCTTTGCTGGCAAGCAACTAGAGGACGGGCGTACGCTTGCTGATTACAAC 6082 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | |||||||| |||| | || ||||| || Sbjct 6083 ATCCAGAAGGAGTCGACGCTGCATTTGGTGCTGCGCCTTCGTGGTGGTAT 6132 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||| |||||| | || || || || ||||| |||||| Sbjct 6131 ATGCAGATTTTTGTGAAAACATTGACGGGCAAGACAATCACGCTCGATGTGGAGCCGTCC 6190 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCAT 27094 ||| ||||||| | || || ||| ||||||||||| ||||| || Sbjct 6191 GACACGATTGACAACGTGAAGGCAAAGATTCAAGACAAGGAAGGTAT 6237 >seq18532 Length=6745 Score = 116 bits (128), Expect = 3e-21 Identities = 148/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 26977 ATTTATACGC--CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGA 27034 |||| || || ||||||||||||||| || || |||| |||||| | || || | || Sbjct 5354 ATTTTTAGGCAGCATGCAGATATTTGTGAAGACCTTGACGGGCAAGACCATCACGTTGGA 5295 Query 27035 AGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCAT 27094 ||||| ||||||||| ||||||| | || || |||||||| ||||| ||||| || Sbjct 5294 TGTGGAGCCGTCCGACACGATTGACAATGTTAAGGCCAAAATTCAGGACAAGGAAGGAAT 5235 Query 27095 ACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGT 27154 ||||| || || |||||| |||| | || ||||| || | || || | || | Sbjct 5234 CCCACCTGACCAGCAGCGTCTAATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACACT 5175 Query 27155 TTCCGATTACAACATTCAAAAGG 27177 |||| |||||||| ||||||| Sbjct 5174 GGCCGACTACAACATCCAAAAGG 5152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434772778446720