Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_028683.1 Length=177643 Score E Sequences producing significant alignments: (Bits) Value seq16668 82.4 9e-11 seq16667 82.4 9e-11 >seq16668 Length=16414 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/101 (80%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 139398 GTTTATGTCAAATGAGCCATTCAA--TTCTGGGTCGTTAATGAAACCTTTCCAACCTACA 139455 |||||| | |||||| |||| ||| ||| |||||||| || || |||||||| || ||| Sbjct 3516 GTTTATATTAAATGATCCAT-CAAGGTTC-GGGTCGTTTATTAATCCTTTCCAGCCAACA 3459 Query 139456 GTTGTTCTTGGTTTCTCAAAATAAACACGCATAACCAAAAG 139496 ||||| | |||||||||||| || || ||||| || | ||| Sbjct 3458 GTTGTGCGTGGTTTCTCAAAGTATACGCGCATGACGATAAG 3418 >seq16667 Length=9966 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/101 (80%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 139398 GTTTATGTCAAATGAGCCATTCAA--TTCTGGGTCGTTAATGAAACCTTTCCAACCTACA 139455 |||||| | |||||| |||| ||| ||| |||||||| || || |||||||| || ||| Sbjct 8684 GTTTATATTAAATGATCCAT-CAAGGTTC-GGGTCGTTTATTAATCCTTTCCAGCCAACA 8627 Query 139456 GTTGTTCTTGGTTTCTCAAAATAAACACGCATAACCAAAAG 139496 ||||| | |||||||||||| || || ||||| || | ||| Sbjct 8626 GTTGTGCGTGGTTTCTCAAAGTATACGCGCATGACGATAAG 8586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568139309041680