Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_029028.1 Length=60754 Score E Sequences producing significant alignments: (Bits) Value seq12040 93.3 2e-14 >seq12040 Length=21001 Score = 93.3 bits (102), Expect = 2e-14 Identities = 184/264 (70%), Gaps = 10/264 (4%) Strand=Plus/Minus Query 30103 CCATACACATATGCTTGGCGTCAATATAAACACACACAGCTTTCGGGTCCAAGTGCTCTA 30162 ||||||||||||| | || ||||| || |||| |||| || || | | | | Sbjct 2874 CCATACACATATGTGTCGCTTCAATCACCACTGCCACACCTTTAGGCTCAATGACACCCA 2815 Query 30163 CGATGGCATCCGCAATTTGGTTAGTTAGACGCTCTTGGACTTGCAAACGACGAGCAAAAG 30222 || |||| ||||||||| || || || |||||||||||||||| || || ||||| Sbjct 2814 TTATTGCATGCGCAATTTGTTTTGTCAGTCGCTCTTGGACTTGCAGCCGTCGGGCAAACA 2755 Query 30223 CATCTACGACGCGAGACAGTTTAGA-AAGCCCAACAATTTTCCCATTTGGTACATATCCC 30281 | || || |||| |||||| || ||||| || |||||||||||| | || || Sbjct 2754 CTTCACTCACACGAGCAAGTTTACTCAATCCCAA-AACTTTCCCATTTGGGATGTACCCG 2696 Query 30282 ACAACAGCAC---GACCGATAATGGGAGCCATATGATGCTCACA-ATGGCTATAAACTGG 30337 | | | || | ||| ||| || |||||||||| ||||| |||| ||| | Sbjct 2695 ATA--TGTACTTTGCCCG-TAAACGGTACCATATGATGTTCACACATGG-AATAGAGATC 2640 Query 30338 AATATCACGGACGATGACCATTTC 30361 ||| ||||| || ||||||||||| Sbjct 2639 AATGTCACGTACAATGACCATTTC 2616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194229399126512