Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq5719 127 2e-24 >seq5719 Length=28269 Score = 127 bits (140), Expect = 2e-24 Identities = 403/624 (65%), Gaps = 8/624 (1%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 |||||| ||||||| || || |||| ||| || || | ||||| || ||||| Sbjct 19658 TTTCCGTTGCTGACCACAAAGAAGGTGTTTTGGCGCGGTGTAGCGGAGGAATTGTTGTGG 19717 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 || | || |||| ||||| | | ||| | |||| | | || ||||| Sbjct 19718 TTTATAAGTGGGGACACGAGTGCGCACACGCTACAGCAAAAGGGGATTCACATTTGGGAT 19777 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGAC 34399 | | | || || || || || |||||| | ||||| | || || |||| || || Sbjct 19778 GGTAATGGCTCGCGTGAGTTCTTGGACAGTAGAGGGTTGCACTCCCGCGAGGTTGGAGAT 19837 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459 | || || || || || || || ||| | |||||||| || || | | | Sbjct 19838 CTCGGACCTGTATATGGCTTTCAATGGCGTCACTTTGGTGCCACATACACGAATATGCAT 19897 Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACA----CCTTGAA 34515 || || ||| | || || || | ||||||||| | | ||||| |||| || | | Sbjct 19898 GCAGATTATACTGGTCAAGGCGTGGACCAGCTCGCGGAGGTGATTGACAAGCTCCGTTCA 19957 Query 34516 GCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCT 34575 ||||| |||| | |||| ||| | | || |||||||| |||||||| Sbjct 19958 ----AACCCCAGTGACCGTCGGATTGTGCTTTCGGCTTGGAACCCAGCGGATCTCCACGA 20013 Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 |||||| | || || || |||| | |||||||||||||| ||| | || ||| |||| Sbjct 20014 AATGGCGTTGCCACCTTGTCACATGTTTTGCCAATTCTACGTGGCGGACGGTGAGTTGTC 20073 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 || || | ||||| || || | ||||||||| | || || || || || ||||| || Sbjct 20074 ATGTCAAATGTATCAGCGTTCCGCCGACATGGGGCTTGGAGTTCCCTTTAATATTGCCAG 20133 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755 ||||| ||||| ||| | | | ||||| || ||| || ||||| ||| | | Sbjct 20134 CTACGCGCTGCTTACGCGCTTAGTTGCTCAAGTAACTGGGCTGAAACCTGGCGAGTTTAT 20193 Query 34756 GCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCT 34815 ||| | || || || ||| | || || |||||| | |||| || | | ||||| Sbjct 20194 TCATGTTATCGGTGACGCACATGTGTATCTAAACCACGTGGAGCCACTTCAAAAGCAGCT 20253 Query 34816 GCAACGAGAGCCCCGACCGTTCCC 34839 | ||||| || || |||||||| Sbjct 20254 GACACGAGCACCGCGTCCGTTCCC 20277 Score = 127 bits (140), Expect = 2e-24 Identities = 403/624 (65%), Gaps = 8/624 (1%) Strand=Plus/Minus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAG 6565 |||||||| || || ||||| |||||| | | || |||| | |||||| || || Sbjct 20277 GGGAACGGACGCGGTGCTCGTGTCAGCTGCTTTTGAAGTGGCTCCACGTGGTTTAGATAC 20218 Query 6566 ATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCG 6625 | ||| || || || | ||| | | ||| ||||| || ||| || ||||| Sbjct 20217 ACATGTGCGTCACCGATAACATGAATAAACTCGCCAGGTTTCAGCCCAGTTACTTGAGCA 20158 Query 6626 ATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCT 6685 | | | ||| ||||| ||||| || ||||| || || || || || | ||||||||| Sbjct 20157 ACTAAGCGCGTAAGCAGCGCGTAGCTGGCAATATTAAAGGGAACTCCAAGCCCCATGTCG 20098 Query 6686 CCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGG 6745 | || || ||||| | || || |||| ||| || | ||| |||||||||||||| | Sbjct 20097 GCGGAACGCTGATACATTTGACATGACAACTCACCGTCCGCCACGTAGAATTGGCAAAAC 20038 Query 6746 GTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACG 6805 |||| || || || | |||||| |||||||| |||||||| || | | ||| Sbjct 20037 ATGTGACAAGGTGGCAACGCCATTTCGTGGAGATCCGCTGGGTTCCAAGCCGAAAGCACA 19978 Query 6806 ATCCTTCTGTCATCAGGGTTCCGCTTCAAGG----TGTCGATCACGTACTGCAGCTGGTC 6861 |||| | |||| ||||| | | || |||| ||||| | | |||||||| Sbjct 19977 ATCCGACGGTCACTGGGGTT----TGAACGGAGCTTGTCAATCACCTCCGCGAGCTGGTC 19922 Query 6862 CGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCA 6921 | | || || || | ||| || || | | | || || |||||||| | ||| Sbjct 19921 CACGCCTTGACCAGTATAATCTGCATGCATATTCGTGTATGTGGCACCAAAGTGACGCCA 19862 Query 6922 CTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTC 6981 || || || || || || || | || || |||| || || | ||||| | |||| Sbjct 19861 TTGAAAGCCATATACAGGTCCGAGATCTCCAACCTCGCGGGAGTGCAACCCTCTACTGTC 19802 Query 6982 CAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTT 7041 || || || || || || | | | ||||| || | | |||| | ||| | Sbjct 19801 CAAGAACTCACGCGAGCCATTACCATCCCAAATGTGAATCCCCTTTTGCTGTAGCGTGTG 19742 Query 7042 GGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACAC 7101 | ||||| |||| || | ||||||| || ||||| | || || ||| |||| Sbjct 19741 CGCACTCGTGTCCCCACTTATAAACCACAACAATTCCTCCGCTACACCGCGCCAAAACAC 19682 Query 7102 ACGTTTCGTCGTCAGCAGCGGAAA 7125 || || ||||||| |||||| Sbjct 19681 CTTCTTTGTGGTCAGCAACGGAAA 19658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448112310541920