Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq13324 89.7 4e-13 >seq13324 Length=6237 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||||||||| || || || || || || | ||||| || | Sbjct 5902 AATGCAGATTTTTGTGAAAACACTGACGGGCAAGACAATCACGCTCGATGTGGAGCCGTC 5961 Query 27849 CGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| ||| |||| || || ||| || ||||| |||||| ||||| || Sbjct 5962 CGACACGATTGACAAC--GTGAAGGCAAAGATTCAAGACAAGGAAGGTATTCCGCCAGAC 6019 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 ||||| || |||| ||||| || || ||| | || |||| || | ||||| | ||||| Sbjct 6020 CAGCAGCGTCTAATCTTTGCTGGCAAGCAACTAGAGGACGGGCGTACGCTTG-CTGATTA 6078 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||| || ||| || |||||||||| |||| | ||||| || Sbjct 6079 CAACATCCAGAAGGAGTCGACGCTGCATTTGGTGCTGCGCCTTCGTGGTGG 6129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355746227162622