Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq13324 109 5e-19 seq18532 98.7 9e-16 >seq13324 Length=6237 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||||||| ||||| ||| || || || || ||||| ||||| || || | Sbjct 6118 GCGCAGCACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAGCAAGCGTACGCCC 6059 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || || || ||||| ||||| || |||||||||||||| | || | | || || Sbjct 6058 GTCCTCTAGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCGGAATACCTTCCTT 5999 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 || | ||| | | || | ||| | | | ||| ||| || |||||| || | ||||| Sbjct 5998 GT-CTTGAATCTTTGCCTTCACGTTGTCAATCGTGTCGGACGGCTCCACATCGAGCGTGA 5940 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || |||||||| ||||| ||||| || ||||| Sbjct 5939 TTGTCTTGCCCGTCAGTGTTTTCACAAAAATCTGCAT 5903 >seq18532 Length=6745 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 ||||| || || || ||||| ||||| || | || || ||||| ||||| ||||| || Sbjct 5154 TTTTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATT 5213 Query 39157 AGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG- 39214 |||||||||||||| |||||| | | || |||||| ||| ||| | | | | | | Sbjct 5214 AGACGCTGCTGGTCAGGTGGG-ATTCCTTCCTTGTCC-TGAATTTTGGCCTTAACATTGT 5271 Query 39215 CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAA 39274 | | ||| ||| || |||||| |||| |||||| | || ||||||| || || |||| Sbjct 5272 CAATCGTGTCGGACGGCTCCACATCCAACGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 5331 Query 39275 AGATTTGCAT 39284 | || ||||| Sbjct 5332 ATATCTGCAT 5341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429405372959618