Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq13324 127 1e-24 seq2613 86.0 4e-12 >seq13324 Length=6237 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || ||||| || ||||| || || ||||| ||||| || || | | Sbjct 5902 AATGCAGATTTTTGTGAAAACACTGACGGGCAAGACAATCACGCTCGATGTGGAGCCGTC 5961 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | | || ||| ||| ||||| |||||| | |||||||| || Sbjct 5962 CGACACGATTGACAACGTGAAGGCAAAGATTCAAGACAAGGAAGGTATTCCGCCAGACCA 6021 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| |||| ||||| ||||| ||||| || |||| || || | | |||||||| Sbjct 6022 GCAGCGTCTAATCTTTGCTGGCAAGCAACTAGAGGACGGGCGTACGCTTGCTGATTACAA 6081 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || ||||| || | ||||| || Sbjct 6082 CATCCAGAAGGAGTCGACGCTGCATTTGGT 6111 >seq2613 Length=31273 Score = 86.0 bits (94), Expect = 4e-12 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||||||||||||||| ||||| ||||| ||||| ||||| || || || || | Sbjct 11998 AAAATGCAGATTTTCGTTAAGACCCTGACGGGCAAAACCATCACACTTGACGTGGAGCCG 12057 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGT 23717 |||||| |||| ||| |||| | ||||||| ||||| |||||||| Sbjct 12058 TCGGACAGCATTGATAATGTTAAGGC-AAAAATTCAGGACAAGGAAGGTGT 12107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337899255287288