Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq24131 141 8e-29 >seq24131 Length=32940 Score = 141 bits (156), Expect = 8e-29 Identities = 558/870 (64%), Gaps = 6/870 (1%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 || ||||||||||| || || |||||||| | | ||| || | ||||| |||| || Sbjct 31275 ACACGCTTTTCGAAAAAGTTGGTTTTGCCCTGGAGCGAGATCATGTCCATCCAATCGAAT 31216 Query 4332 GGATTAGTTGCGTTGTAA-TGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTAC 4390 || || |||||| ||| | || ||||| |||| || || |||||||| || Sbjct 31215 GGGTTCTTTGCGTGATAAATCTTGGACACACCC-AGAGAGTAGAGTAAACGGTCAGCAAC 31157 Query 4391 AAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGC 4450 ||| || || ||||||| |||||| || |||| || || || | | ||||| || | Sbjct 31156 AAACTCAATGTACTGGCACATGAGCGCGGAGTTCATGCCGATCAGTTCAACAGGAAGGGA 31097 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTA-T 4509 | || ||| || || || || | || || || || || || | | | Sbjct 31096 ATCACGCACAAATTCGTGCTCGATCTTCACAGCCTCACGAATAATCTCGTGCACACGGCT 31037 Query 4510 CTTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAAA 4568 || | | | || || || | || || | ||| | ||| ||||| || |||| | Sbjct 31036 CTCTGGCAGCTTG-TTGACCA-GTTTCGAGTACATGAGACATGCAAAGTCTGTGTGCATA 30979 Query 4569 CCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTT 4628 |||||||| | || || | || || || || | | ||| ||||| | || | |||| Sbjct 30978 CCTTCGTCACGACTGATTAACTCATTCGAGAAACTCAGTCCAGGCATGAGCCCGCGCTTT 30919 Query 4629 TTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAAC 4688 || |||||||| || | ||| || || || || || |||||||| || | |||||| Sbjct 30918 TTGAGCCAAAAGATGGAACAAAAAGAACCTGAGAAAAAAATGCCTTCAACTGAGGCAAAT 30859 Query 4689 GCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTA 4748 |||| | || | || |||| | | | |||||| | ||||||||| Sbjct 30858 GCTAACAGGCGCTCCGCGTACGACGATACACGCGGATCACACCATTTCAGTGCCCAGTTG 30799 Query 4749 GCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAAT 4808 ||||| || || || || | ||| || | || || || | | |||| || | Sbjct 30798 GCTTTCTTTTTGACACATGAAATGGTTTCGATGGCACGTAAGAGGTGGTTTTTCTCCATA 30739 Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || | |||||| || || || || || || | ||| || || ||||| || || Sbjct 30738 ACATCCTTAATATACGTATCAATGAGCAGCGAGTAAACTTCGGAGTGAATATTCTCAATC 30679 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928 |||||||| || ||||||||||| | |||||| | || |||||||||||| | || | Sbjct 30678 GCAATCTGGAAGCCGTAAAAGCAACGAGCTTCAGGTATTTGAACTTCGTTGCTGAAGTTC 30619 Query 4929 TCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGAT 4988 | | ||| || || || || || || || |||||||| || || | ||||| Sbjct 30618 ATGGCCAGGTTCTCATTCACAATGCCATCGCTCGCTGCAAAGAAGGCAAGTACATGTTTG 30559 Query 4989 ATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCA 5048 ||||||| | || | | |||| || ||||| | || | ||||| Sbjct 30558 ATAAAGTGACGCTCATTGTCCGTAAGATTCACCCAGTCCTTAAGGTCATGTACCAAATCC 30499 Query 5049 ACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGA 5108 | || || | ||||| ||||| || || ||||| |||||||| ||| | || | Sbjct 30498 AACTCCTCGGCCGTCCAGAACGAAGCCTCAGCTTTCTTGTACATCTGCCACACTTCGTGC 30439 Query 5109 TACTGAATCGGAAGTATGACAAATCTGTTG 5138 | |||||| |||| | ||||| | |||| Sbjct 30438 TCCTGAATGGGAAAGAGCACAAAGCGGTTG 30409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426910187789738