Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq24131 188 1e-42 >seq24131 Length=32940 Score = 188 bits (208), Expect = 1e-42 Identities = 382/562 (68%), Gaps = 9/562 (2%) Strand=Plus/Minus Query 48133 ACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAA 48192 |||| | ||||||||| || || | |||||| || | ||| ||||| || || || | Sbjct 31007 ACATGAGACATGCAAAGTCTGTGTGCATACCTTCGTCACGACTGATTAACTCATTCGAGA 30948 Query 48193 ATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 | | || || ||||| || || || |||||||||||||| || | ||||| || | Sbjct 30947 AACTCAGTCCAGGCATGAGCCCGCGCTTTTTGAGCCAAAAGATGGAACAAAAAGAACCTG 30888 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGT 48312 | || || |||||||| || | |||||||| || | ||| |||| | | | Sbjct 30887 AGAAAAAAATGCCTTCAACTGAGGCAAATGCTAACAGGCGCTCCGCGTACGACGATACAC 30828 Query 48313 TGTGTATC-CACCGTT---GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCT 48368 | | ||| |||| || ||||||| | || ||||| || ||||| | || ||||| Sbjct 30827 -GCGGATCACACCATTTCAGTGCCCAGTTGGCTTTCTTTTTGACACATGAAATGGTTTCG 30769 Query 48369 ATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGA 48428 || ||| ||||| |||||| || | ||| |||| || ||||| || | || Sbjct 30768 ATGGCACGTAAGAGGTGGTTTTTCTCCATAACATCCTTAATATACGTATCAATGAGCAGC 30709 Query 48429 CTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCT 48488 || | ||||||||||||||| ||||| || ||||| || |||||||| || | ||| Sbjct 30708 GAGTAAACTTCGGAGTGAATATTCTCAATCGCAATCTGGAAGCCGTAAAAGCAACGAGCT 30649 Query 48489 TCTGTGATCTGTACCTCCGTACAAAATCGTTCA--GCCAAATTCTCATTTACTATTCCAT 48546 || | || || || || | | || ||||| |||| |||||||| || || |||| Sbjct 30648 TCAGGTATTTGAACTTCGTTGCTGAA--GTTCATGGCCAGGTTCTCATTCACAATGCCAT 30591 Query 48547 CACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTT 48606 | || || ||||| || || | ||||||||| ||||| | || ||| || || | Sbjct 30590 CGCTCGCTGCAAAGAAGGCAAGTACATGTTTGATAAAGTGACGCTCATTGTCCGTAAGAT 30531 Query 48607 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCT 48666 | |||||| || | || | | | ||| | || || || ||||| || || |||| Sbjct 30530 TCACCCAGTCCTTAAGGTCATGTACCAAATCCAACTCCTCGGCCGTCCAGAACGAAGCCT 30471 Query 48667 CTGCTTTTTTATACATATTCCA 48688 | ||||| || ||||| | ||| Sbjct 30470 CAGCTTTCTTGTACATCTGCCA 30449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694436207519040