Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq24131 188 1e-42 seq15263 107 3e-18 >seq24131 Length=32940 Score = 188 bits (208), Expect = 1e-42 Identities = 409/607 (67%), Gaps = 9/607 (1%) Strand=Plus/Minus Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681 |||| | ||||||||| || || | ||||| || | ||| ||||| || || || | Sbjct 31007 ACATGAGACATGCAAAGTCTGTGTGCATACCTTCGTCACGACTGATTAACTCATTCGAGA 30948 Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 | | || |||||||| || || ||||||||||||||||| || | ||||| || | Sbjct 30947 AACTCAGTCCAGGCATGAGCCCGCGCTTTTTGAGCCAAAAGATGGAACAAAAAGAACCTG 30888 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCAT 46801 | || || |||||||| || | || ||||| | || | ||| |||| | || Sbjct 30887 AGAAAAAAATGCCTTCAACTGAGGCAAATGCTAACAGGCGCTCCGCGTACGACGATACAC 30828 Query 46802 TATGAATCCACCTTT---GAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTA 46858 || |||| || | ||||| | || || || || ||||| | || ||||| | Sbjct 30827 GCGGATCACACCATTTCAGTGCCCAGTTGGCTTTCTTTTTGACACATGAAATGGTTTCGA 30768 Query 46859 TAGCATTAAAGAGAAAGttttt-ttCATCACTATCTTTAACATATGTATCTATTAAAAGA 46917 | ||| ||||| |||||| | ||| || ||| |||| ||| ||||| || | || Sbjct 30767 TGGCACGTAAGAGGTGGTTTTTCTCCATAAC-ATCCTTAATATACGTATCAATGAGCAGC 30709 Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCT 46977 || | ||| || ||||| || ||||| || ||||| || |||||||| || | ||| Sbjct 30708 GAGTAAACTTCGGAGTGAATATTCTCAATCGCAATCTGGAAGCCGTAAAAGCAACGAGCT 30649 Query 46978 TCAGTAATCTGTACCTCTGTACAAAATCGTTCA--GACAAATTCTCATTCACTATTCCAT 47035 |||| || || || || | | || ||||| | || ||||||||||| || |||| Sbjct 30648 TCAGGTATTTGAACTTCGTTGCTGAA--GTTCATGGCCAGGTTCTCATTCACAATGCCAT 30591 Query 47036 CACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTT 47095 | || || ||||| || || | ||||||||| ||||| | |||| | || || | Sbjct 30590 CGCTCGCTGCAAAGAAGGCAAGTACATGTTTGATAAAGTGACGCTCATTGTCCGTAAGAT 30531 Query 47096 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCT 47155 | |||||| || | || | | | ||| | || || || |||||||| || |||| Sbjct 30530 TCACCCAGTCCTTAAGGTCATGTACCAAATCCAACTCCTCGGCCGTCCAGAACGAAGCCT 30471 Query 47156 CTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTAT 47215 | ||||| || ||||| | ||| | || | | || || ||||| | ||||| | | Sbjct 30470 CAGCTTTCTTGTACATCTGCCACACTTCGTGCTCCTGAATGGGAAAGAGCACAAAGCGGT 30411 Query 47216 TTGGATT 47222 | ||||| Sbjct 30410 TGGGATT 30404 >seq15263 Length=38747 Score = 107 bits (118), Expect = 3e-18 Identities = 1090/1747 (62%), Gaps = 40/1747 (2%) Strand=Plus/Plus Query 75410 CGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTT 75469 |||| ||||||||| || ||||| || ||| ||||| |||| || |||||| || Sbjct 33692 CGTAAATAGTACATGCCCGTTTTCAGTCCCTTTTTCCATGCGTAAAAGTGCATGGACGTG 33751 Query 75470 AGTTTGGAATAAC--TCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGA 75527 ||||| | ||| |||| ||||| |||||||| || | ||||||||| ||| ||| Sbjct 33752 AGTTT--ACTAATCGTCGGGTCGGCAATATGAATGTTTAGCGACTGACTCTGACAAATGT 33809 Query 75528 AAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTT 75587 | || || | ||| ||||| | | | | || |||||| ||||||||| | || | Sbjct 33810 ACGCGCCACGATCGGCCGCAAGATCGAGCACGGCCTTTTGTTTAATTTCCCACACTGTCT 33869 Query 75588 TGAAAACTTGTTTGATATCATCTGGAAGATTTGTA---TTTTGAATGGATCCGCCATCAG 75644 || | || |||| | | |||| ||| | ||||| | ||| || || || Sbjct 33870 TGTACTTTTCCTTGACGTGAGGGGGAATGTTTTTCACTTTTTGTACGGACCCACCGTCGT 33929 Query 75645 ATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAA--AACTC--TA 75700 | |||| | ||| | | ||| | | | | | | | || | ||| | Sbjct 33930 GCAAAATT---TGGTTGCGCACTTCAGGCGTCCAAAGGC-CGAGATCAATGAGCTCATTC 33985 Query 75701 AGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTA 75760 | | || || ||||| ||| || || | ||| || | ||| |||| ||||| Sbjct 33986 ATCAAATATTTGTTCACAATCGTAAACTCGCCGGCCAAGACGCGCCGATTGTACATATTG 34045 Query 75761 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGC 75820 ||||| ||||| | ||||||||||| || | ||| || || || ||||| || ||| Sbjct 34046 GACGTATACGGTTCAATCGATTCATTGTTGCCAAGAATCTGCGCCGTCGAAGCTGTTGGC 34105 Query 75821 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTT--TTAGAT 75878 || || ||||| | || | | || || || || | |||| | || || || Sbjct 34106 ATGGGCGCCACGAGCAA-CGAGTTGCGAATCCC-GTACT-TGATCACCTGTTCCTTCAAT 34162 Query 75879 AT-TTCCAATCCCAAAGATCTGATG---GTACAACATCCCAGAGATCGTATTGTAGAATT 75934 | ||||||||||| | |||| | || || |||| | ||| | || | || Sbjct 34163 GTGTTCCAATCCCACAAGCCTGAGGACGGTGTCACGCCCCACAAATCAAACTGGAAGATC 34222 Query 75935 CCGTTGCTAGCATATGATCCATTATATGTTTCGTAAG-TCCC-GTCCTTTTCAGCTAGTT 75992 || || || ||| || || | | || ||||| | |||| || |||| || | | Sbjct 34223 CCTTTACTCGCAGGGGAGCCTGCAAACGTCTCGTACGGTCCCAGTTCTTTG--GCAATCT 34280 Query 75993 CGCAACT-CGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCT 76051 | || | || ||| | ||| | |||| || ||||| || |||||||| || | || Sbjct 34281 C-CATCGACGTCTCCATGGCAGCAAAATAGATGGTTTCAAAGATCTTCTTGTTCAATTCC 34339 Query 76052 TGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGA 76111 ||||||| || ||||| ||||||| | || ||||| ||||| || || ||||| Sbjct 34340 CGCGCTTCGTCGCTCTCAAATGGATAATTCATGAGGATAAACGCATCGGCAAGGCCCTGG 34399 Query 76112 ACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAA 76171 || || || ||||| || | ||| | | ||||||| | ||||| | |||||| Sbjct 34400 ACCCCGATCCCAATCGGACGATGCCGCATATTGGACGTACGTGCTTCCTTTACGGGGTAA 34459 Query 76172 TAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGT 76231 ||||| | ||| || | || || || |||| || ||||| |||||| | | | Sbjct 34460 TAATTGACATCAATCACCTTGTTTAGGTTTCGCGTCACGACTTTGGTCACGTCGTACAAT 34519 Query 76232 TTGAGAAAATCAAATTTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTA 76291 || |||||| || | || |||||| | | || | ||||| || ||| Sbjct 34520 TTTTGAAAATTGAACGCACGGTCGTCCACAAATTTCGGTAACGCCACCGATGCGAGGTTA 34579 Query 76292 CAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACAC 76351 || ||||| || |||| | | || | || | || ||| | ||||| | Sbjct 34580 CACACGGCCACTTCATCGGGCGACGTGTACTCAATCACTTCACAGCACAAGTTACTCGAT 34639 Query 76352 TTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACA 76411 || || || ||||| ||||| || ||| || | |||||| || || | Sbjct 34640 CGAATCGTGCCGAGATTCTGTTGATTCGACTTGCGATTCGCCGCGTCCTTGTACAGCATG 34699 Query 76412 AACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTT 76471 ||||| || || |||||||| | || | || | ||| | | ||||| Sbjct 34700 AACGGCACGCCCGTCTCAATCTGGGCGTCCAAGATGGCAAACCACAATTGTTGGGCTTTC 34759 Query 76472 ATTATAGATTTGTATCGCTTC--TCTCTTTCATATTGTGTATATAACCGTTCAAATTCAT 76529 || | || ||| || || ||| || |||| || || |||||| || Sbjct 34760 ATGGT--CTTCCGCGCGCGTCCATCGTGTTCGTACTGTGCGTACAAGTTTTCAAACTCGG 34817 Query 76530 CTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCAT 76589 | ||||| || | |||||| || ||| |||||||| | || |||||| |||| Sbjct 34818 CGCCCCAGCATTCGTACAAACCGGGCGCTTCGTTCGGACAGAATAAACTCCACTCTCCAT 34877 Query 76590 CTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGG 76649 | | || || |||||||| | |||||| ||||| | ||| ||| | ||| || | Sbjct 34878 TGGCTTCTACGCGCTTCATAAACAAATCAGGAATCCACAAGGCATAAAACAAATCACGTG 34937 Query 76650 TTCTACGTTCTTCATTTCC-TGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAA 76708 | | || || || || || || | |||| || | ||||| | | || | | Sbjct 34938 CCCGATGTAACTCGTTGCCGTGGTTTTTCCGTAAG-TCCAAAAACTCGAGCACGTCGGCA 34996 Query 76709 TGCCATGGTTCTAGATATATCGCCATAACACCCGGT-CGTTTATTACCTCCCTGATCTAT 76767 ||||| || || | || || | || | | || | ||||| || || ||||| | Sbjct 34997 TGCCACGGCTCCAAGTAGAT-GGCAAACGAGCCTTTGCGTTTCCCGCCGCCTTGATCCAC 35055 Query 76768 ATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATT 76827 ||| | || || | |||| | || | |||||| ||||| || || || || | || || Sbjct 35056 ATACCGTGCCGTATCATTAAAGACGCGCAACATGGGAATGATCCCATTCGAGGAGCCGTT 35115 Query 76828 TGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCC 76887 || || ||| ||||| ||| ||||| ||| ||| | ||||| ||||| Sbjct 35116 GGTGCCCCGAATGTAACTGTTGGTTGCTCGAATGTTATGCATACTGATCCCTATCCCTCC 35175 Query 76888 TGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATC 76947 ||| ||||||||| ||||| |||| | || || || || || || || ||| Sbjct 35176 GGCCCATTTAGAGATACAGGCACATTGTTTAAGCGTATCGTAAATCCCTTCAATCGAATC 35235 Query 76948 ATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAA 77006 ||| || || ||| |||||||| |||| ||| | | || || || |||| Sbjct 35236 ATCTTGCATTGCTAA-TAGAAAACACGAGGACAATTGGGGCCGGGGTGTCCCCGCGTTAA 35294 Query 77007 ACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAA 77066 | || || || | || || || || | |||| || | || | ||| || || | Sbjct 35295 ATAACGTTGGCGTCGCGTGGGTAAAAAACTTTTGCGACATGAGCTCGTACGTCTCTAACG 35354 Query 77067 CTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTC 77126 | || | || | | | ||||| |||| || || ||||| | ||| || || || | Sbjct 35355 CCGCGGCAATGTTGCTCTTGTGAATCCCTAACGCCACGCGCATAATCATTTGTTGCGGCC 35414 Query 77127 GTTCTAC 77133 |||| || Sbjct 35415 GTTCGAC 35421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712695691739520