Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq13324 192 1e-43 seq18532 145 2e-29 seq24131 93.3 9e-14 seq2613 89.7 1e-12 >seq13324 Length=6237 Score = 192 bits (212), Expect = 1e-43 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| ||| | ||| || || ||||||||||| ||||| Sbjct 6130 ACCACCACGAAGGCGCAGCACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAGC 6071 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||| || || ||||||||||| || || |||||||| | ||| || ||||| ||| Sbjct 6070 AAGCGTACGCCCGTCCTCTAGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCGG 6011 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||||||||| |||||||| || ||| | || || ||||| || | || || Sbjct 6010 AATACCTTCCTTGTCTTGAATCTTTGCCTTCACGTTGTCAATCGTGTCGGACGGCTCCAC 5951 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||| ||||| ||||| ||||||| || || || || ||||||||| Sbjct 5950 ATCGAGCGTGATTGTCTTGCCCGTCAGTGTTTTCACAAAAATCTGCATT 5902 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| ||||||||||| |||||||| || ||| | || || ||||| || | || || Sbjct 6237 ATACCTTCCTTGTCTTGAATCTTTGCCTTCACGTTGTCAATCGTGTCGGACGGCTCCACA 6178 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| |||||||| || || || || |||||||| Sbjct 6177 TCGAGCGTGATTGTCTTGCCCGTCAATGTTTTCACAAAAATCTGCAT 6131 >seq18532 Length=6745 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||||||||||||||| || || |||||||||||||| || || || || |||||||| Sbjct 5154 TTTTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATT 5213 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | ||| || |||||| || || || |||||||| || || || || || || | || Sbjct 5214 AGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCCTGAATTTTGGCCTTAACATTGTCA 5273 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || ||||| || | || || || | ||||| ||||| |||||||| ||||| || ||| Sbjct 5274 ATCGTGTCGGACGGCTCCACATCCAACGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAT 5333 Query 283092 ATCTGCAT 283099 |||||||| Sbjct 5334 ATCTGCAT 5341 >seq24131 Length=32940 Score = 93.3 bits (102), Expect = 9e-14 Identities = 295/439 (67%), Gaps = 29/439 (7%) Strand=Plus/Plus Query 229980 GTTGAGGGTATTCTGTTCTCCGGGAGTTTCTGCGCCATCTTTTGGCTACGCAACAAGGGC 230039 ||||| || ||| | ||||| || ||| || ||||||||||||| ||| ||| || Sbjct 30869 GTTGAAGGCATTTTTTTCTCAGGTTCTTTTTGTTCCATCTTTTGGCT---CAAAAAGCGC 30925 Query 230040 G---TCATGCCCGGGCTCGGTCTGTCGAACGAATTCATCAGCAGGGACGAAGGTCTTCAC 230096 | ||||||| || || || | ||||| || || ||||| | ||||||||| | ||| Sbjct 30926 GGGCTCATGCCTGGACTGAGTTTCTCGAATGAGTTAATCAGTCGTGACGAAGGTATGCAC 30985 Query 230097 -CAGCAATTTGGCGAGGTCT--TGTATTCGAAGCTAAATAACAAACTACCTTTCGAAACG 230153 ||| | || || | |||| |||| ||||| || ||||| || || || || Sbjct 30986 ACAG--ACTTTGC-ATGTCTCATGTACTCGAAACTGGTCAACAAGCTGCCAGA-GAGCCG 31041 Query 230154 -GTGAAACAAATCGTCACAGAAGTAGTTGCAAAT-GAAAAGGAGTTCATTTGCGACGCTA 230211 ||| | | || | || | || | | || || | || ||||| | || | Sbjct 31042 TGTGCACGAGATTATTCGTGAGGCTGT-GAAGATCGAGCACGA----ATTTGTG-CGTGA 31095 Query 230212 TTCCTTGCC-GT----CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATT 230266 |||| | || || || ||||||||||| | | |||||| | || || || || || Sbjct 31096 TTCCCTTCCTGTTGAACTGATCGGCATGAACTCCGCGCTCATGTGCCAGTACATTGAGTT 31155 Query 230267 CGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAG-TGTATAACTCCAAGAACC 230325 || ||||| ||| | || | || |||| | ||| | ||| || | ||||||| Sbjct 31156 TGTTGCTGACCGTTTACTCTACTCTCT-GGGTGTGTCCAAGATTTATCACGCAAAGAACC 31214 Query 230326 CCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTG 230385 | |||| || ||||| | || || |||||||| ||||| ||||| ||||||||||||| Sbjct 31215 CATTCGATTGGATGGACATGATCTCGCTCCAGGGCAAAACCAACTTTTTCGAAAAGCGTG 31274 Query 230386 TCAGCGATTA-TCAAAGGC 230403 | | || || || ||||| Sbjct 31275 TGGGTGAATATTCGAAGGC 31293 >seq2613 Length=31273 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 ||| |||||||| || || ||||| || || |||| || ||||||| | || || || Sbjct 12105 ACCTTCCTTGTCCTGAATTTTTGCCTTAACATTATCAATGCTGTCCGACGGCTCCACGTC 12046 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || ||||| || || ||||||| ||||||||||| |||||||||||| Sbjct 12045 AAGTGTGATGGTTTTGCCCGTCAGGGTCTTAACGAAAATCTGCATTTTC 11997 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| |||| || || ||||| ||||||||||| || Sbjct 12303 ACCACCACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGAATGTTGTAGTCCGC 12244 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || | ||||| ||||| || || || || |||||||||| ||| || |||||| || Sbjct 12243 GAGAGAACGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 12184 Query 282992 AATACC 282997 ||| || Sbjct 12183 AATTCC 12178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046379963686044