Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq13324 131 1e-25 seq18532 123 2e-23 >seq13324 Length=6237 Score = 131 bits (144), Expect = 1e-25 Identities = 175/242 (72%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | || ||||| || ||||| |||||| |||||||||||||| Sbjct 6133 CATACCACCACGAAGGCGCAGCACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATC 6074 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| |||| || || ||||| || |||||||| | ||||||||| |||| Sbjct 6073 AGCAAGCGTACGCCCGTCCTCTAGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGG 6014 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||||||| || ||||| ||||| | | || ||||||| | || Sbjct 6013 CGGAATACCTTCCTTGTCTTGAATCTTTGCCTTCACGTTGTCAATCGTGTCGGACGGCTC 5954 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCA-TGATGTGAA 44345 ||| || | ||| || ||||| ||||| || || ||||| || || |||| || |||||| Sbjct 5953 CACATCGAGCGTGATTGTCTTGCCCGTCAGTGTTTTCACAAAAATCTGCATTGTTGTGAA 5894 Query 44346 TG 44347 || Sbjct 5893 TG 5892 >seq18532 Length=6745 Score = 123 bits (136), Expect = 2e-23 Identities = 146/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||||||||||||||| ||||| ||| ||| | || || |||||||| || ||||||| Sbjct 5152 CCTTTTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 5211 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 | | ||||||||| || | || | |||||||| ||| || || ||| || ||| Sbjct 5212 TTAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCCTGAATTTTGGCCTTAACATTGT 5271 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||||| | ||||| |||| ||| || ||||| ||||| | ||||||||| Sbjct 5272 --CAATCGTGTCGGACGGCTCCACATCCAACGTGATGGTCTTGCCCGTCAAGGTCTTCAC 5329 Query 44326 GAAGATTTGCATGATG 44341 || || |||||| || Sbjct 5330 AAATATCTGCATGCTG 5345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359872879558962