Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq13324 125 7e-24 seq18532 114 1e-20 >seq13324 Length=6237 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| ||||||||| ||||||||| ||||| || || | Sbjct 6129 CCACCACGAAGGCGCAGCACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAGCA 6070 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || ||| |||| || || |||||||| || || || || ||||| ||||| | ||| Sbjct 6069 AGCGTACGCCCGTCCTCTAGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCGGA 6010 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCAC 41814 | | |||||||| ||| | ||||| | ||| | || |||||| || |||||| Sbjct 6009 ATACCTTCCTTGTCT-TGAATCTTTGCCTTCACGTTGTCAATCGTGTCGGACGGCTCCAC 5951 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || || || |||||||| || || || ||||||||||| Sbjct 5950 ATCGAGCGTGATTGTCTTGCCCGTCAGTGTTTTCACAAAAATCTGCAT 5903 >seq18532 Length=6745 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 |||| || ||||| ||||||| || ||||| | || |||||||||||||| || || | Sbjct 5152 CCTTTTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 5211 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 | || ||||| ||||| | || | | ||||||||| ||| |||| || | ||| | Sbjct 5212 TTAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCC-TGAATTTTGGCCTTAACATTG 5270 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | |||||| || |||||| |||| ||| || || || ||||||| ||||| || Sbjct 5271 TCAATCGTGTCGGACGGCTCCACATCCAACGTGATGGTCTTGCCCGTCAAGGTCTTCACA 5330 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 5331 AATATCTGCATG 5342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462149209063200