Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2286 122 2e-22 seq6170 109 1e-18 >seq2286 Length=9169 Score = 122 bits (134), Expect = 2e-22 Identities = 387/590 (66%), Gaps = 20/590 (3%) Strand=Plus/Plus Query 60894 GGAGATTTAACTGATTCAGCTAGTTTGATTAATATAATTACCAAGATTCGTCCGGATGAA 60953 || ||||| || ||||| | | ||||||| ||||| |||| || || || | || Sbjct 3175 GGGGATTTGACAGATTCGTCAAATTTGATTGATATAGTTACAAAAGTTAAGCCAAACGAG 3234 Query 60954 ATCTATAATATGGCTGCTCAAAGTTTTGTGGGAGATAGCTTTCACCAAGCTGAAGTG-AC 61012 | |||||| | | ||| |||||| || || | | ||| || ||| || Sbjct 3235 GTTTATAATTTAGGTGCGCAAAGTCACGTTAAAG-TCTCGTTCGAGTTGCCTGAGTATAC 3293 Query 61013 TGCAAATGTAGACGCTCTTGGTGTTCTGCGTTTGTTAGACGCCGTTCGTATAGCAGGTTT 61072 | |||| |||||||| ||||| || || || ||| |||| | ||||| ||| | | Sbjct 3294 TTCAAACGTAGACGCAATTGGTACACTACGGTTATTAAACGCAATACGTATTGCAAATAT 3353 Query 61073 ----GAACTCTCGAA--TTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGA 61126 || || || ||| ||||||||| || ||| || | |||||||| ||||| Sbjct 3354 TGCCGATAGCTGCAAATTTTATCAAGCATCCACGAGTGAGCTATTCGGAAAAGTGCAAGA 3413 Query 61127 AATTCCTCAAACAGAAAGGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACT 61186 || || |||| ||| | || ||||| || || | ||||| | |||||| |||| Sbjct 3414 AACGCCCCAAAAAGAGACCACACCGTTCTACCCAAGATCACCGTACGCTGTTGCTAAACA 3473 Query 61187 ATACGCTTACTGGAT--TTGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAAC 61244 ||| ||||| ||||| |||| || || || ||| | ||||||||| || | || Sbjct 3474 ATATGCTTATTGGATAGTTGTCAAC--TATCGGGAGGCTTATGGAATGCACTTAAGCAAT 3531 Query 61245 TCGATT-TGTTTCAATCACGAGAGTCCCAATAGAGGTCATCAG---TTTGTGACTCGTAA 61300 || ||||| || ||||| ||||| | || || | | || || |||||||| Sbjct 3532 GGCATACTGTTT-AACCACGAAAGTCC---TCGACGTGGACTGGCTTTCGTCACTCGTAA 3587 Query 61301 AATTACGAAGGCGGTTGCAAATATTTTTAACGGTGTCGAAAAATGCATGTATCTAGGAAA 61360 |||||| | || || || || ||| ||| | ||||| || || ||||| Sbjct 3588 AATTACAAGAGCTGTGGCTAACATTAAATGCGGCAACCAAAAAACTTTGACACTGGGAAA 3647 Query 61361 CATAGACTCTAAAAGAGATTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGAT 61420 | || | || | || |||||| |||| |||| ||| | | || |||||||| || Sbjct 3648 TTTGGATGCAAAGCGGGACTGGGGACATGCAAAAGAATATGTATATGCCATGTGGTTAAT 3707 Query 61421 GTTGCAACAAGATACTCCAGATGACTACGTTATTGCGACTGGACAGACGA 61470 | | |||||||| |||| ||||| ||| ||| |||||| | |||| Sbjct 3708 GCTTCAACAAGAATTACCAGGAGACTATGTTTGTGCAACTGGAGAAACGA 3757 >seq6170 Length=2853 Score = 109 bits (120), Expect = 1e-18 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| ||||||||||||| ||||||| ||||||||| |||||||||| Sbjct 2648 TGCCCGTCTAGCTCAGTTGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCATGGGTTCGAG 2707 Query 165769 CCCCACGATGGGCAT 165783 ||||| | ||||||| Sbjct 2708 CCCCATGGTGGGCAT 2722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057700040877980