Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq8698 127 2e-24 >seq8698 Length=1787 Score = 127 bits (140), Expect = 2e-24 Identities = 384/583 (66%), Gaps = 15/583 (3%) Strand=Plus/Plus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || ||||| || ||||| | ||||| || | || | |||||| |||||| ||| Sbjct 1204 CATGCGAAATCACAATGCAAACCTTCATCACGTGAAATCAATTCGTTTGAAAAACATAAA 1263 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321 |||||||| | || ||||| |||||||| || | ||| || || || ||||| Sbjct 1264 CCTGGCATCATACCACGTTTTTTTAACCAAAACACGGCACAGAAGGAACCACTGAAGAAG 1323 Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA 16381 ||||| ||| | || || || | | || || ||| ||| || | | | || Sbjct 1324 ATACCTTCACACGCAGCGAATGCAACGACGCGCTCTGCGAACGATGCGTTGTC--TGCGT 1381 Query 16382 A--TCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 |||| | |||||| ||||||| ||| | ||| || || || || || | Sbjct 1382 TGGTCCAACGCAAGCACCATTCTGCTTTTTCTTTGACGGCATCGATTGTATCAATAGCAT 1441 Query 16440 TAAACAATTTCTCTTTTTCCTGAATAT--CGATTATATACGTATCAATCAGTAAACTGTA 16497 | ||||| | |||||| || || ||| || || || || || | || || Sbjct 1442 TCAACAAACGCGTTTTTTCTGGACCATTACGA--ATGTAAGTGTCTATTAACAAGGAATA 1499 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557 || ||||| || || || || || || || ||||| |||||||| || || || || | Sbjct 1500 CACTTCTGCATGAATATTTTCGATAGCGATTTGAAAGCCATAGAAACAACGTGCTTCAGG 1559 Query 16558 TATTTGTACTTCCACGTAAAATCGTTCCGC--CAGGTTCTCATTCACGATACCGTCACTT 16615 | ||| ||||| | |||| |||| | || || || || || |||||||| | Sbjct 1560 CACTTGCACTTCGTTGGAAAA--GTTCATCAACAAATTTTCGTTTACAATACCGTCGGAT 1617 Query 16616 GCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGC 16675 ||||| ||||| ||||||| || ||||||| || ||||| | | | ||| | Sbjct 1618 GCAGCGAAAAATGCCAATACGTTGCTAATGAAGTAACGTTCGTTATCGCTCATTTTATCC 1677 Query 16676 CAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCA-AAAGCTAGCCACTGC 16734 |||||||| ||||| | | || | ||||| | ||||| |||| | || | || Sbjct 1678 CAATCTTTCGCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCCAGAAAGAT-GCTTCAGC 1736 Query 16735 CTTTTTATACATTTTCCAAATATCATTGTATTGTA-TGGGAAA 16776 ||||||||||||| |||||||||||| | ||| | ||||||| Sbjct 1737 TTTTTTATACATTTGCCAAATATCATTATGTTGAATTGGGAAA 1779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511355932548720