Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq769 237 2e-57 seq8698 161 1e-34 >seq769 Length=28997 Score = 237 bits (262), Expect = 2e-57 Identities = 1183/1854 (64%), Gaps = 74/1854 (4%) Strand=Plus/Minus Query 52832 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGC 52891 ||| | ||||||| ||| ||||| || ||||||| ||| ||||| | ||||| ||| Sbjct 13905 GGTCTTGTACGTAAATAATACATACCGGTTTTTAAACCTTTTTTCCATGCATAAAAGTGC 13846 Query 52892 ATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 52951 || |||| ||| | || || |||| || || | ||| | | |||||||||| Sbjct 13845 ATGGAGGTTAATTTACCAGTGCTTGGTGCTGCAATGTGTACATTTAAACTTTGACTTTGA 13786 Query 52952 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAA 53011 || || | || || | ||| || ||||| |||| || || ||||| ||||||||| Sbjct 13785 TCAATATATGCACCACGGTCAGCTGCCATATTTAAAATAGTTTTTTGACTAATTTCCCAT 13726 Query 53012 ATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGT---ATTCTGAATAGATCC 53067 | ||||| || || || | || |||| ||| | ||||| ||| |||| ||||| Sbjct 13725 ACCGTTTTGTATAAATCTTTGTAT-TCTTTTGGCAAGTTTGATACATTTTGAACGGATCC 13667 Query 53068 ACCATCTACCATAATCCTATTC--TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 53125 |||||| | ||||| || | |||| | |||| | ||| | | ||||| Sbjct 13666 ACCATCAGCGATAATTTGGTTACGTACATCTGGTG--TCCAAATATTTAATTTGATTAAA 13609 Query 53126 ACTCTAAGGAGATGCGGATTAACTACTTG-AAATTCTCCAGACAATACTCTCCGAGTGTA 53184 || | | | ||| ||||| || || |||||| || | | ||| | ||| |||| Sbjct 13608 TCTTTCAATAAATGTTTGTTAAC-ACATGTAAATTCACCGGCAAGTACACGGCGATTGTA 13550 Query 53185 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 53244 ||||| || || ||||| | | | || || || |||| |||||| | || ||||| Sbjct 13549 CATATTGGAAGTGTATGGTTCAAAACATTCGTTGTTGCCCATAATTTGCGAGGTAGATGC 13490 Query 53245 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCT--GATTTTATCT 53302 ||| ||||| ||||| || | ||| ||||| | ||| ||||||| ||| ||| | Sbjct 13489 AGTTGGCATTGGTGCAACTAGTAAGGAGTTTCTTACACC--ATGTTCTTTGATATTAGCG 13432 Query 53303 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGA 53362 || | |||||| |||| |||| || || || ||||| | Sbjct 13431 CGTAATCCTGCCCAATCCCAACGATCGGATGGAGTGACGTTCCACATATCTGGTTGTAAA 13372 Query 53363 ATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTT--CCTTCTCAGCT 53419 || || || || | | || ||| | ||||| | |||||| || | || | || Sbjct 13371 ATTCCTTTGCTTACTGGACTG-CCTTCGTATGTTTTGTATGGACCAAAACGTTTT--GCC 13315 Query 53420 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 53479 |||||| ||| |||||| | | ||||| ||||| ||||| | || || | Sbjct 13314 TCTTCACATGACGCACTTAATGCTGCAAAGTAAATCGTTTCAAAGATGTCTTTGTTCAAT 13255 Query 53480 TCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 53539 | ||| | |||| |||||||| | | ||||| || |||||||| ||| Sbjct 13254 TGCAATGCAGCTGGGCTTTCAAATGGCATGCGCATCATGATAAATGCATCTGCTAAACCT 13195 Query 53540 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 53599 ||||| || | ||| || ||||| |||||| || || |||||||||| | || Sbjct 13194 TGAACTCCTAAACCAATTGGTCTGTGTCTCAAGTTGGAATATTCAGCTTCTTTTACCGGG 13135 Query 53600 TAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTT---TGACCACATCC 53656 || |||| | ||| |||| ||| | || || | | |||| | || | || Sbjct 13134 TAGAAATTTACATCAATAACACGATTCAAATT---GATAGTGACTTGTCTTACAATGTCA 13078 Query 53657 T-TCAGTTTGAGAAAATCAAA------TTGTCCATCT-----ATTACAAACATGTTCAAT 53704 | | || |||| | || |||||| | || | | ||| || | Sbjct 13077 AATAACATTTGGAAATTGTAAACTGGCTTGTCCTCGTCGCTCATGTCCACCATTTTTGGT 13018 Query 53705 --GCA-ATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATC 53761 ||| |||||||| | |||||||| || | |||| || | | ||||| || ||| Sbjct 13017 AAGCAGATAGATGCTAAGTTACAAACAGCAATTTCATCAGGTGCAGTATATTCGATGATC 12958 Query 53762 TCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 53821 |||||||| | |||||||| || || ||||| || ||||||||||| || ||| Sbjct 12957 TCAGTGCATAAATTACTACTTTTAATCGTTCCCAAGTTTTGTTGATTGGATTTACGATTA 12898 Query 53822 CACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCT 53881 || ||||| || || | ||| |||||||||| ||||||| || ||| || || | Sbjct 12897 CATGCATCTTTGTACAACATGTATGGCGTACCTGTTTCAACTTGACTTTCAATGAT---T 12841 Query 53882 TT---CCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT---TTCTCTTTCGTAT 53935 || ||| | | | || || | | |||| | ||| |||| |||| ||| Sbjct 12840 TTAAACCATAATTCTTGTGCACGTACGGT---TCTGTAACCCTTGCCTTCTTTTTCATAT 12784 Query 53936 AGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCC 53995 | |||||| ||| || | || ||||| | | ||| || | ||| Sbjct 12783 TGATGGTACAATGCTTCGAATTTCTCACCCCACGTCTCATGCAAATCACGTGCAACATTT 12724 Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 || || | ||| | ||| | ||| || | | || |||||||| || | ||| |||||| Sbjct 12723 GGGCAAAACAATGTCCATTGTCCATCTGCTTGTACACGTTTCATGAATAAATCTGGAATC 12664 Query 54056 CAAAGAGCTATA-AATAGATCTC-TG---GTTCTATGTTCCTCGTTTCCTGTATTCTTTT 54110 || | || ||| || | ||| | || || | || ||| || | || ||| |||| Sbjct 12663 CACATTGC-ATAGAACAAATCGCGTGCACGTGC-ATTTTCATCAC--CATG-ATTTTTTT 12609 Query 54111 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTC 54170 ||||||| | ||| | | | ||||| |||||| ||||||||||| || | | | | Sbjct 12608 TAAGATCTAAAAACTCGAAGACATCAGCATGCCATGGTTCCAAGTAAATAGCAAAAGAAC 12549 Query 54171 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 54230 | | ||| || || || |||| ||| | ||||| | ||| | ||||||| || Sbjct 12548 CTTTTCTTTTACCGCCACCTTGGTCTACGTAACGTGCGGTATCATTGAATACTCTCAGCA 12489 Query 54231 TTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAA 54290 |||| | ||| ||||| || ||||| || ||| ||| || |||||| | ||| | Sbjct 12488 TTGGGACAATTCCATTACTTGAGCCATTTGTACCGCGGATGTAACTTCCAGTACTACGGA 12429 Query 54291 TATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 54350 | || || | || || || || || |||| |||| || || ||||| Sbjct 12428 TGTTGTGAACACTCAATCCAATACCACCAGCATATTTACTGATTTGCGCACAAGATTTTA 12369 Query 54351 ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA 54410 |||||||||| || || | || |||||| |||| || | ||| || | || Sbjct 12368 ACGTATCATAAATACCTCCAATGGAATCATCTTTCATTGCAACCAAAAAGCATGATGCCA 12309 Query 54411 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC--CATTT 54468 ||| | || || || ||||| || || || || | || || |||||| ||||| Sbjct 12308 ATTGTGGGCGTGGGGTACCAGCATTGAACAATGTCGGCGTTGCATGGGTAAACATCATTT 12249 Query 54469 T--TCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCC 54525 | ||| || || ||| || ||||| ||| ||||| | ||| ||||| || Sbjct 12248 TACTCATCAA----ATCGTATGTGATAATAGCACTGTCGATATCTTCCTTG-TGAATACC 12194 Query 54526 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAG 54585 ||||| |||||||| | ||| || || ||||||||||| || | |||||||||| Sbjct 12193 AACTGCAACACGCATAATCATATGTTGTGGTCTTTCAACAATTTCACCATTTATTTTCAA 12134 Query 54586 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 54639 ||| || | ||| | ||||| |||||||| || | | || ||||| || Sbjct 12133 CAAATATGCACGTTCTAGCGTTTTGAAACCAAAGTAATCAAACGAGAAGTCACG 12080 >seq8698 Length=1787 Score = 161 bits (178), Expect = 1e-34 Identities = 613/947 (65%), Gaps = 29/947 (3%) Strand=Plus/Plus Query 23781 ATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAG--ACATAACTC 23838 ||||| ||||||| ||| ||| |||||||| || | ||||||| | ||| | Sbjct 844 ATGTTCTTTTAAAAATCACAATCCAAAGAAAATTGTTGATCTTCTTCACTTACACCAACA 903 Query 23839 CCATTTTTTGG-TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGAT 23897 ||| ||||| ||||| || ||||||||||| ||||| || |||||||||| || || Sbjct 904 CCAGCTTTTGAATATTCGCCTACACGTTTTTCAAAAAAGTTGGTTTTACCTTGCAAGGAG 963 Query 23898 ATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAAT---CCCAAT 23954 || ||||||| ||||| |||| |||| |||| || ||| ||| || || ||| Sbjct 964 ATCATTTCCATCCAATCGAATGGGTTGGATGCATTGTACATT---TTAGATACACCTAAT 1020 Query 23955 TCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATT 24014 | | ||| | ||| ||| || || || ||| ||||| | | ||||| Sbjct 1021 GCTTGTAACAAACGATCAGCGCAGAATTCAATGTATTGGCACATCAATGTTGAGTTCATG 1080 Query 24015 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 24074 || || | || |||||| | | | | |||| ||| ||| || ||||| | Sbjct 1081 CCAATCAATTCAACTGGTAATGATTGGGAGACAAATACTTTTTCGATTTCAACCGCATTG 1140 Query 24075 GTTATAATAGATCTTACTGTTTCTTCACTCGGTG---GATACAATAAATG---TTTAAAC 24128 || || || | ||||| || ||| ||| | |||||| ||| | Sbjct 1141 CCGATGATTGAATGAATCGTTTCCTCT---GGTAAACGATTTACTAAATGATCTTTGTAT 1197 Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188 | || ||||||||||| || || | ||| || || | ||| |||||||| ||||| Sbjct 1198 AATAAGCATGCGAAATCACAATGCAAACCTTCATCACGTGAAATCAATTCGTTTGAAAAA 1257 Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGA 24247 | || ||||| | ||||| ||||| | |||||| | || | || || || ||| Sbjct 1258 CATAAACCTGGCATCATACCACGTTTTTTTAACCAAAACACGG-CACAGAAGGAACCACT 1316 Query 24248 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTC 24307 ||||| || ||||| || || || |||| | | ||| | | ||| |||| Sbjct 1317 GAAGAAGATACCTTCACACGCAGCGAATGCAACGACGCGCTCTGCGAACGATGCGTTGTC 1376 Query 24308 AT-GTA--TCCACTTTTGAGC-CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 || |||| ||| ||| || || || | ||| || | ||||| || | Sbjct 1377 TGCGTTGGTCCAACGCA-AGCACCATTCTGCTTTTTCTTTGACGGCATCGATTGTATCAA 1435 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423 ||||||| || | | ||||||| || || || || || || || || | Sbjct 1436 TAGCATTCAACAAACGCGTTTTTTCTGGACCATTACGAATGTAAGTGTCTATTAACAAGG 1495 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 ||||| ||| | |||||| ||||| || || |||||||| || |||||||| | || | Sbjct 1496 AATACACTTCTGCATGAATATTTTCGATAGCGATTTGAAAGCCATAGAAACAACGTGCTT 1555 Query 24484 CGGTAATCTGTACTTCTATACAAAATCGTTCTGCTA--AATTTTCATTCACTATTCCGTC 24541 | | | || ||||| | |||| |||| | | ||||||| || || || ||||| Sbjct 1556 CAGGCACTTGCACTTCGTTGGAAAA--GTTCATCAACAAATTTTCGTTTACAATACCGTC 1613 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 24601 || || ||||| |||||||| | | || || || ||||| | | ||| Sbjct 1614 GGATGCAGCGAAAAATGCCAATACGTTGCTAATGAAGTAACGTTCGTTATCGCTCATTTT 1673 Query 24602 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 24661 || |||||| || ||||| | | || | |||||| | ||||| || ||||| || Sbjct 1674 ATCCCAATCTTTCGCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCCAGAAAGATGCTTC 1733 Query 24662 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAA 24708 || ||||||||||| | ||| || |||| || ||||||||| |||| Sbjct 1734 AGCTTTTTTATACATTTGCCAAATATCATTATGTTGAATTGGGAAAA 1780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593653722778080