Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq810 95.1 1e-14 seq4707 93.3 3e-14 seq2305 84.2 2e-11 seq775 84.2 2e-11 >seq810 Length=26514 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| ||||| || |||||||| ||| || ||||| | Sbjct 7516 ATGCAAATTTTCGTAAAAACTTTGACTGGTAAAACCATCACCCTTGATGTAGAACCATCT 7575 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | || ||||| ||| || |||||||| | || ||||||| Sbjct 7576 GATACTATTGAAAACGTAAAACAAAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAA 7635 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 ||| | ||||||||||| || ||||||||||||||| | | ||| | || |||| Sbjct 7636 CAACGTCTTATCTTTGCAGGTAAACAATTGGAAGATGGACGTACACTTAG--TGACTACA 7693 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 | || ||||| ||| | ||| | || | || ||||| | || |||||| Sbjct 7694 ACATCCAAAAAGAAGCAACTTTACATTTAGTATTACGTCTTCGTGGAGGG 7743 >seq4707 Length=625 Score = 93.3 bits (102), Expect = 3e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 25111 TCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTG 25170 |||||||||| || || |||||||| | || |||||||||| | |||||||||| Sbjct 252 TCAAGCAAAAGATCCAAGACAAAGAAGGAATTCCTCCAGATCAACAACGTCTTATCTTTG 311 Query 25171 CGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTA 25230 | || ||||||||||||||| ||| | | ||||| ||||| ||||| ||| | | Sbjct 312 CTGGTAAACAATTGGAAGATGGACGTACTCTTTCTGATTATAATATCCAAAAAGAAGCAA 371 Query 25231 CTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | ||||| | || || || ||||| || || Sbjct 372 CCCTTCATTTAGTATTGCGTTTACGTGGTGG 402 >seq2305 Length=8964 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 25042 TATTCATCAAA-ACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAGAGACG 25100 |||| |||| | |||||||| || |||||||| || || ||||| | || || Sbjct 1325 TATT-ATCATAGACATTGACTGGGAAAACCATCACGCTTGATGTAGAACCGTCTGATACT 1383 Query 25101 GTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGA 25160 | | | | || |||||||| |||||||||||| | || |||||||||| | Sbjct 1384 ATTGAAAACGTTAAACAAAAAATACAAGATAAAGAAGGTATCCCACCAGATCAACAACGT 1443 Query 25161 CTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTC 25218 | || ||||| |||||||||||||||||| | | ||| | || |||||||||| Sbjct 1444 TTGATATTTGCAGGCAAACAATTGGAAGATGGGCGTACACTTAG--TGACTACAATATTC 1501 Query 25219 AAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||| ||| | || | || | || ||| ||||||| || || Sbjct 1502 AAAAAGAAGCAACATTGCATTTAGTTTTAAGATTACGTGGTGG 1544 >seq775 Length=28483 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||||||||| || |||||||| || || ||||| | Sbjct 10464 ATGCAAATTTTCGTAAAAACATTGACTGGTAAAACCATCACTCTTGATGTAGAACCATCT 10523 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | || ||||| || || |||||||| | || ||||||| Sbjct 10524 GATACTATTGAAAACGTTAAACAAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAA 10583 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT 25190 ||| | ||||||||||| || ||||||||||||||| Sbjct 10584 CAACGTCTTATCTTTGCAGGTAAACAATTGGAAGAT 10619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410751009764444