Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq8698 129 6e-25 seq810 104 2e-17 >seq8698 Length=1787 Score = 129 bits (142), Expect = 6e-25 Identities = 389/588 (66%), Gaps = 16/588 (3%) Strand=Plus/Minus Query 116613 TTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCT 116672 ||||||| || ||| | || || |||| ||||| ||||| || || || || |||| Sbjct 1780 TTTTCCCAATTCAACATAATGATATTTGGCAAATGTATAAAAAAGCTGAAGCATCTTTCT 1721 Query 116673 GGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACA 116732 |||| | || ||| | ||| || | | || ||| || ||||| ||| ||| | Sbjct 1720 GGACTGCGGAAGAGTTAGACTTGGCACAAGATGCGAAAGATTGGGATAAAATGAGCGATA 1661 Query 116733 ACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCA 116792 |||| || | ||||| | |||| |||| |||||||| || |||||| || || | Sbjct 1660 ACGAACGTTACTTCATTAGCAACGTATTGGCATTTTTCGCTGCATCCGACGGTATTGTAA 1601 Query 116793 ACGAGAATCTGGTC--GAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTT 116850 |||| ||| || | || | |||| | || ||||| ||| | || || || || || Sbjct 1600 ACGAAAATTTGTTGATGAACTTTTCCAAC--GAAGTGCAAGTGCCTGAAGCACGTTGTTT 1543 Query 116851 CTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGA 116910 ||| |||||||| ||||| || || || | || | ||| ||||||| | || || Sbjct 1542 CTATGGCTTTCAAATCGCTATCGAAAATATTCATGCAGAAGTGTATTCCTTGTTAATAGA 1483 Query 116911 CACGTACGTGCGCTCT--TCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATG 116968 ||| ||| | || | || || | || | | |||||||||| || || || || || Sbjct 1482 CACTTACATTCGTAATGGTCC-AGAAAAAACGC-GTTTGTTGAATGCTATTGATACAAT- 1426 Query 116969 CCGTG-CGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGA-GAGGCCG 117026 | || ||||||||| || || || ||| |||| |||| | | ||||| | || Sbjct 1425 CGATGCCGTCAAAGAAAAAGCAGAATGGTGCTTGCGTTGGACCAAC-GCAGACAACGCAT 1367 Query 117027 CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTT 117086 | |||| |||||| | || || ||||| || || || ||||||| || | Sbjct 1366 CGTTCGCAGAGCGCGTCGTTGCATTCGCTGCGTGTGAAGGTATCTTCTTCAGTGGTTCCT 1307 Query 117087 TCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGG--CCTGACTTTCAGCAA 117144 || ||| | |||||| | || ||||| || | ||||| || || ||||| || Sbjct 1306 TCTGTGCCGTGTTTTGGTTAAAAAAACGTGGTATGATGCCAGGTTTATGTTTTTCA--AA 1249 Query 117145 CGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTT 117192 ||| | || || | || || ||| ||||||| || || || || || Sbjct 1248 CGAATTGATTTCACGTGATGAAGGTTTGCATTGTGATTTCGCATGCTT 1201 >seq810 Length=26514 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||||||||| | || || |||||||||||| | || || ||| | | Sbjct 7516 ATGCAAATTTTCGTAAAAACTTTGACTGGTAAAACCATCACCCTTGATGTAGAACCATCT 7575 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||||| | || |||| |||| |||||||| || || || | || || Sbjct 7576 GATACTATTGAAAACG-TAAAACAAAAGATTCAAGACAAAGAAGGAATTCCACCAGATCA 7634 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || |||| || || ||||| |||| || | || || || | |||||||| Sbjct 7635 ACAACGTCTTATCTTTGCAGGTAAACAATTGGAAGATGGACGTACACTTAGTGACTACAA 7694 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| || || || || | ||| |||| || || Sbjct 7695 CATCCAAAAAGAAGCAACTTTACATTTAGTATTACG 7730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515160297564960