Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq6389 185 1e-41 seq2305 159 5e-34 seq734 134 2e-26 seq4707 122 1e-22 seq1282 104 4e-17 seq4160 98.7 1e-15 seq775 98.7 1e-15 seq3551 95.1 2e-14 seq4309 93.3 6e-14 seq619 91.5 2e-13 seq1530 87.8 3e-12 >seq6389 Length=961 Score = 185 bits (204), Expect = 1e-41 Identities = 170/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 124552 TAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTA 124611 |||| || |||| || ||||| || ||| |||| | || |||| ||||| ||||| Sbjct 226 TAAAAACTTTAACTGGAAAAACAATTACTCTAGATACAGAGGCAAGCGATACCATTTCGC 167 Query 124612 ATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTT 124671 | | ||||| || || |||||||||||||| || ||||| || |||||| | | || | Sbjct 166 GTGTGAAACAAAAGATCCAAGATAAAGAAGGGATTCCACCAGACCAACAACGATTGATAT 107 Query 124672 TTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAAT 124731 | ||||| ||||||||||| ||| | || ||||||| |||||||||||||||||||||| Sbjct 106 TCGCAGGTAAACAATTAGAAGATGGACGTACATTAGCTGATTATAATATTCAAAAAGAAT 47 Query 124732 CAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 | || |||||||| ||||| |||||||| |||||| Sbjct 46 CTACGTTGCATTTAGTTTTGCGTTTACGTGGTGGT 12 >seq2305 Length=8964 Score = 159 bits (176), Expect = 5e-34 Identities = 177/232 (76%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 124555 AGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATT 124614 ||||| | || || ||||| || || | || | ||| | |||||| ||| || Sbjct 1334 AGACATTGACTGGGAAAACCATCACGCTTGATGTAGAACCGTCTGATACTATTGAAAACG 1393 Query 124615 TAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTG 124674 | ||||| ||||| ||||||||||||||||| ||||| ||||||||| | | || |||| Sbjct 1394 TTAAACAAAAAATACAAGATAAAGAAGGTATCCCACCAGATCAACAACGTTTGATATTTG 1453 Query 124675 CAGGAAAACAATTAGAGGATAGTCGAACA-TTAGAAGATTATAATATTCAAAAAGAATCA 124733 |||| |||||||| || ||| | || ||| |||| || || ||||||||||||||| || Sbjct 1454 CAGGCAAACAATTGGAAGATGGGCGTACACTTAG-TGACTACAATATTCAAAAAGAAGCA 1512 Query 124734 ACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTCATAAAAA 124784 || |||||||| |||||| | ||||| ||||| || ||| ||||| |||| Sbjct 1513 ACATTGCATTTAGTTTTAAGATTACGTGGTGGCATGCAAATTTTCATTAAAA 1564 >seq734 Length=33368 Score = 134 bits (148), Expect = 2e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 124545 ATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACA 124604 |||||| |||| || | || || ||||| || ||| | || ||| |||||| Sbjct 10321 ATATTTGTAAAAACCTTGACTGGTAAAACCATCACTCTTTTTGTTCCTTCAACAGATACA 10380 Query 124605 ATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGG 124664 ||| ||| |||| ||||| ||||||||||||||||| ||||| ||||||||| | Sbjct 10381 ATTGAAAATACAAAATTAAAAATACAAGATAAAGAAGGTATTCCACCAGATCAACAACGT 10440 Query 124665 CTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAA 124724 | || |||||||| || ||| |||| ||| |||| |||||| ||||||||||| ||| Sbjct 10441 TTGATATTTGCAGGTAAGCAACTAGAAGATGGTCGTACATTATCCGATTATAATATACAA 10500 Query 124725 AAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||| | |||||||| || |||||||| || || || || Sbjct 10501 GAGGAAGCCGTATTGCATTTAGTATTACGTTTGCGTGGAGGCAT 10544 >seq4707 Length=625 Score = 122 bits (134), Expect = 1e-22 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 124617 AAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCA 124676 || || || || ||||| |||||||| || || || ||||||||| | ||||| ||||| Sbjct 254 AAGCAAAAGATCCAAGACAAAGAAGGAATTCCTCCAGATCAACAACGTCTTATCTTTGCT 313 Query 124677 GGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736 || |||||||| || ||| | || || | ||||||||||| ||||||||| |||| Sbjct 314 GGTAAACAATTGGAAGATGGACGTACTCTTTCTGATTATAATATCCAAAAAGAAGCAACC 373 Query 124737 TTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||||| || || |||||||| |||||||| Sbjct 374 CTTCATTTAGTATTGCGTTTACGTGGTGGTAT 405 >seq1282 Length=23488 Score = 104 bits (114), Expect = 4e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||| | ||| | || || | || || ||||| || ||| | || | | |||| Sbjct 1073 ATGCAATTCTTTGTTAAAACGTTGACTGGTAAAACAATCACTTTGGACGTATTACAAAAT 1132 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||| | || ||||| || |||||| | |||||||| ||||| |||||| Sbjct 1133 GAATTGATTGCAGATGTAAAATTAAAGATTCAAAAGAAAGAAGGATGTCCACCAGATCAA 1192 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||||||||||| | ||||| || |||| || |||||| ||||| || Sbjct 1193 CAACGAATTATTTTTGCAGGTTATCAATTGGAAGATACGCGTACATTATCCGATTACAAC 1252 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 |||||||||||| | || | ||||| || ||||| Sbjct 1253 ATTCAAAAAGAAGCTACCGTCCATTTAGTATTACG 1287 >seq4160 Length=5066 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 124548 TTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATT 124607 ||| | || || |||| || ||||| || ||| | || | ||| || |||||||||| Sbjct 876 TTTGTTAAAACTTTAACTGGTAAAACCATCACTCTTGATGTAGAACCATCTGATACAATT 935 Query 124608 TCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTT 124667 | ||| ||||||| ||||| ||||||||||||||||| || || | ||||||| | | Sbjct 936 GCAAATATAAAACAAAAAATACAAGATAAAGAAGGTATCCCTCCAGGTCAACAACGTTTG 995 Query 124668 ATTTTTGCAGGAAAACAATTAGAGGAT 124694 || | ||| ||| |||||| || ||| Sbjct 996 ATATATGCGGGACTACAATTGGAAGAT 1022 >seq775 Length=28483 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 124644 ATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA 124703 || ||||| ||||||||| | ||||| |||||||| |||||||| || ||| | || || Sbjct 10704 ATTCCACCAGATCAACAACGTCTTATCTTTGCAGGTAAACAATTGGAAGATGGACGTACC 10763 Query 124704 TTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGT 124763 | ||||||||||| ||||||||| |||| || ||||| || | |||||||| || Sbjct 10764 CTTTCTGATTATAATATCCAAAAAGAAGCAACCTTACATTTAGTACTTCGTTTACGTGGA 10823 Query 124764 GG 124765 || Sbjct 10824 GG 10825 >seq3551 Length=5962 Score = 95.1 bits (104), Expect = 2e-14 Identities = 169/246 (69%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 124533 AATACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGA---TT 124589 |||||| | ||||| ||||| ||| ||| ||| | || || || |||| | || Sbjct 3363 AATACATTTCAAATTTTTATGAAGCTGGTAAATGGCCAGACCATTACGTTAGATAACATT 3422 Query 124590 GAAGCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCA 124649 | | | |||||| |||| ||| || || | ||||||||||| ||||||||||| ||| Sbjct 3423 GCAACTCCTGATACCATTTTTAACTTGAAGCGTAAAATTCAAGACAAAGAAGGTATCCCA 3482 Query 124650 CCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAA 124709 || | ||| | | |||||| || ||| | |||||||||| ||| | | | Sbjct 3483 CCAAGTGCGCAACGATTAATTTTTAATGGCAAAGACGTAGAGGATAGATCCACAGTTGTA 3542 Query 124710 GATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATT 124769 || | |||||| | |||||||| || | || | || ||||||||| ||||| || Sbjct 3543 GAATGTAATATAAAGAAAGAATCTACGATACAACTTGTATTACGTTTATATGGTGGGATG 3602 Query 124770 AAAAAT 124775 || ||| Sbjct 3603 AATAAT 3608 >seq4309 Length=4463 Score = 93.3 bits (102), Expect = 6e-14 Identities = 136/190 (72%), Gaps = 7/190 (4%) Strand=Plus/Minus Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| |||| ||| || |||| ||||| |||| ||||||||||||| ||| |||| Sbjct 3162 GATACCATTTTTAACTTGAAACGTAAAATCGAAGACAAAGAAGGTATACGACCATGTCAA 3103 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTA---GAAGATTAT 124715 ||||| | | |||| || ||| | ||| |||| | | || || | ||| | | Sbjct 3102 CAAAGATTGAATTTTAAGGGCAAAGACTTA---GATAATGCATCAGTAGTTGCAGAATGT 3046 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 |||| ||| ||||| ||| | || |||||||||||||||| ||||| || || ||| Sbjct 3045 GATATAAGAAAGGAATCGACTATACAACTGGTTTTACGTTTACGTGGTGGGATGAATAAT 2986 Query 124776 TCATAAAAAT 124785 | ||| ||| Sbjct 2985 AC-TAATAAT 2977 >seq619 Length=74796 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 124626 ATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAA 124685 || ||||||| ||||| |||| || || ||||| | | ||||||| ||| |||||| Sbjct 48438 ATCCAAGATAGGCAAGGTGTACCGCCAAATAAACAACGTTTGATTTTTGGAGGTAAACAA 48497 Query 124686 TTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTG 124745 ||||| || ||| |||| |||| || | || |||||||| || |||||||| Sbjct 48498 TTAGACAATGATCGCCCATTGTCTTATTACAACGTCCAGAAAGAATCGACGTTGCATTTA 48557 Query 124746 GTTTTACGTTTACGAGGTGGTATTAAAA 124773 || |||||| | ||||||||| | |||| Sbjct 48558 GTATTACGTCTTCGAGGTGGTGTGAAAA 48585 >seq1530 Length=14954 Score = 87.8 bits (96), Expect = 3e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 124601 TACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACA 124660 ||| ||| | | ||||| | ||||||||||| ||||||||||| ||||| | ||| Sbjct 14365 TACGATTCTTGAATTAAAGCGTAAAATTCAAGACAAAGAAGGTATCCCACCAAGTGCACA 14306 Query 124661 AAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATAT 124720 | | | |||||| || ||| | |||||||||| ||| | | ||| | ||||| Sbjct 14305 ACGATTAATTTTTAATGGCAAAGACGTAGAGGATAGATCCACAGTTGTAGAATGCAATAT 14246 Query 124721 TCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAA 124771 |||||||||| || | || | ||||||||||||| ||||| || || Sbjct 14245 AAAAAAAGAATCTACGATACAACTTATTTTACGTTTACGTGGTGGGATGAA 14195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755369632492800