Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq2336 116 7e-21 >seq2336 Length=8744 Score = 116 bits (128), Expect = 7e-21 Identities = 215/308 (70%), Gaps = 17/308 (6%) Strand=Plus/Minus Query 135643 GTTTTGCATATAGAACTTAGGA-GATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGC 135701 ||| | ||||||||| ||| || | ||||| ||||| | | || || || | | || Sbjct 8349 GTTGTACATATAGAA-TTACGACGTTGGGCAGATGTAATGGTAATTGCACCTGCATCAGC 8291 Query 135702 AAATACGTTAGCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAG 135761 |||||| |||| ||| |||| | ||| |||||||||| ||| | || | | ||| ||| Sbjct 8290 AAATACAATAGCCAAATTAGCACAAGGTTTATGCGATAACTTATTAACATGTGTTGCAAG 8231 Query 135762 AGCCTGGGAT-----ACAA-ACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTAT 135815 ||| |||||| ||| ||||| | |||| | | ||||||||||||||| | || Sbjct 8230 AGCGTGGGATTTTAAACAGGACAAATTAATCATATGC---CCTGCAATGAATACTATGAT 8174 Query 135816 GTGGGAACATCCTATTACAGAAAAACATATAGATACGTTAAAATATATGGGT--TTC-AT 135872 |||||| || || |||| || ||| || || |||||| | || ||| ||| || Sbjct 8173 GTGGGATCACCCATTTACGTTGAAGCATTTAAATTTATTAAAAGAAATTGGTTGTTCTAT 8114 Query 135873 AGAAATAGAATGCATAGaaaaaaaaCTAGCATGTGGAGACGTAGGAAATGGTGCTATGGC 135932 || | ||| |||||||||| |||||||||| || | || || ||||| | | Sbjct 8113 AG---TTGAACCACAAGAAAAAAAATTAGCATGTGGTGATATTGGCAAAGGTGCATTAGA 8057 Query 135933 AGAAGTTG 135940 | |||||| Sbjct 8056 AAAAGTTG 8049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923091255525840