Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq8698 176 4e-39 >seq8698 Length=1787 Score = 176 bits (194), Expect = 4e-39 Identities = 603/924 (65%), Gaps = 31/924 (3%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 ||||||||||| ||| | |||||| | ||||| || | || ||| | || | Sbjct 851 TTTAAAAATCACAATCCAAAGAAAATTGTTGATCTTCTTCACTT-ACACCAACACCAGCT 909 Query 15945 TTTGA-TATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| ||||| | || | |||||||| || || ||||| |||| || || || || Sbjct 910 TTTGAATATTCGCCTACACGTTTTTCAAAAAAGTTGGTTTTACCTTGCAAGGAGATCATT 969 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063 ||||| |||| || || || || | || |||| || ||| | || Sbjct 970 TCCATCCAATCGAATGGGTTGGATGCATTGTACATTTTAGATACACCTAATGCTTGTAAC 1029 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 || | ||| || ||||| || || || ||| || ||||||| || || ||| Sbjct 1030 AAACGATCAGCGCAGAATTCAATGTATTGGCACATCAATGTTGAGTTCATGCCAATCAAT 1089 Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTT---CAATGATT 16180 | ||| || | || || | | ||| |||||| || | |||||| | | |||||| Sbjct 1090 TCAACTGGTAATGATTGGGAGACAAATACTTTTTCGATTTCAACCGCATTGCCGATGATT 1149 Query 16181 --AT--ATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTG---TTTAAACATTAT 16233 || ||| || || || | |||| |||| ||| || ||| | | || Sbjct 1150 GAATGAATCGTTTCCT---CTGGTAAACGA----TTTACTAAATGATCTTTGTATAATAA 1202 Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 || || |||||||||||||| ||||| || | || || ||||||||||| | Sbjct 1203 GCATGCGAAATCACAATGCAAACCTTCATCACGTGAAATCAATTCGTTTGAAAAACATAA 1262 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA---AATGAACCAGAAAA 16350 ||||||||| | || |||||||| | |||||| | ||||| || |||||| || Sbjct 1263 ACCTGGCATCATACCACGTTTTTTTAACCAAAACA---CGGCACAGAAGGAACCACTGAA 1319 Query 16351 GAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttt-tac 16409 ||| ||||||||| || || |||||||| | ||||| || ||| | || | | | Sbjct 1320 GAAGATACCTTCACACGCAGCGAATGCAACGACGCGCTCTGCGAACGATGCGTTGTCTGC 1379 Query 16410 tttctatccattttttagcccaatt-tgctttttgtttAACACAGTTCATGTTCTCTATT 16468 || |||| ||| | ||| |||||||| ||| || | || | || || Sbjct 1380 GTTGG-TCCAACGCA-AGCACCATTCTGCTTTTTCTTTGACGGCATCGATTGTATCAATA 1437 Query 16469 GCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTA 16528 ||||| || ||| |||||||| | || ||| ||||| ||||||| || | Sbjct 1438 GCATTCAACAAACGCGTTTTTTCTGGACCATTACGAATGTAAGTGTCTATTAACAAGGAA 1497 Query 16529 TACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCG 16588 |||| ||||| ||||||||| || || || || ||||| ||||| || || | ||||| Sbjct 1498 TACACTTCTGCATGAATATTTTCGATAGCGATTTGAAAGCCATAGAAACAACGTGCTTCA 1557 Query 16589 GATATTTGTACTTCAGAGTAAAACCTT-TCTGCTAAGTTTTCGTTAACTATTCCATCGCT 16647 | | ||| ||||| | |||| | || | || |||||||| || || || ||| Sbjct 1558 GGCACTTGCACTTCGTTGGAAAAGTTCATCAACAAA-TTTTCGTTTACAATACCGTCGGA 1616 Query 16648 AGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAA 16707 || || ||||| || | || || |||| || | ||||||||| | ||| Sbjct 1617 TGCAGCGAAAAATGCCAATACGTTGCTAATGAAGTAACGTTCGTTATCGCTCATTTTATC 1676 Query 16708 CCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGC 16767 ||| || ||||| || || || | |||||| ||||||| ||||| || |||| Sbjct 1677 CCAATCTTTCGCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCCAGAAAGATGCTTCAGC 1736 Query 16768 CTTTTTATACATTTTCCATATGTC 16791 ||||||||||||| ||| || || Sbjct 1737 TTTTTTATACATTTGCCAAATATC 1760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462459123315600