Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq8698 223 3e-53 >seq8698 Length=1787 Score = 223 bits (246), Expect = 3e-53 Identities = 609/920 (66%), Gaps = 17/920 (2%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 ||||||||| ||| || ||||| | ||| |||| | | ||| || |||| Sbjct 853 TAAAAATCACAATCCAAAGAAAATTGTTGATCTTCTTCACTTACACCAACACCAGCTTTT 912 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 |||||| | || | ||||||||| ||||| |||||||||| || || || ||||| Sbjct 913 GAATATTCGCCTACACGTTTTTCAAAAAAGTTGGTTTTACCTTGCAAGGAGATCATTTCC 972 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 14035 || |||| ||||| || | || | ||| |||| ||||| | || || || Sbjct 973 ATCCAATCGAATGGGTTGGATGCATTGTACATTTTAGATACACCTAATGCTTGTAACAAA 1032 Query 14036 CTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 14095 | ||| || ||| ||||| ||||| |||| || | ||||| || || | || Sbjct 1033 CGATCAGCGCAGAATTCAATGTATTGGCACATCAATGTTGAGTTCATGCCAATCAATTCA 1092 Query 14096 ACAGG-AATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT--A 14152 || || ||| || | || | |||| ||||||| || || || | | || || | Sbjct 1093 ACTGGTAATGAT-TGGGAGACAAATACTTTTTCGATTTCAACCGCATTGCCGATGATTGA 1151 Query 14153 ATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATG---TTTAAAAATTAAACACGCA 14209 || ||| |||| | | | ||| | || ||| ||| | | ||| || || Sbjct 1152 ATG--AATCGTTTCCTCTGGTAAACGATTTACTAAATGATCTTTGTATAATAAGCATGCG 1209 Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269 ||||||||||| | || ||||| | ||| | |||||||||||| ||| |||||| Sbjct 1210 AAATCACAATGCAAACCTTCATCACGTGAAATCAATTCGTTTGAAAAACATAAACCTGGC 1269 Query 14270 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 14329 |||| || ||||||||||||||||| | ||| ||| || || ||||| || || Sbjct 1270 ATCATACCACGTTTTTTTAACCAAAACACGGCACAGAAGGAACCACTGAAGAAGATACCT 1329 Query 14330 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT-ATCCA 14388 ||| ||||| || || | | || ||| | |||||||| || | | || | |||| Sbjct 1330 TCACACGCAGCGAATGCAACGACGCGCTCTGCGAACGATGC-GTTGTCTGCGTTGGTCCA 1388 Query 14389 TTTTCTAGC-CCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14447 | ||| |||||| | ||||| ||| | ||| ||||| ||||||||||| || | Sbjct 1389 -ACGCAAGCACCATTCTGCTTTTTCTTTGACGGCATCGATTGTATCAATAGCATTCAACA 1447 Query 14448 AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14507 || | || ||| | | | |||||| || || || | ||| ||||| ||| | Sbjct 1448 AACGCGTTTTTTCTGGACCATTACGAATGTAAGTGTCTATTAACAAGGAATACACTTCTG 1507 Query 14508 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14567 || || ||||| ||||| || ||||| ||||| ||||| | ||||| | | ||| | Sbjct 1508 CATGAATATTTTCGATAGCGATTTGAAAGCCATAGAAACAACGTGCTTCAGGCACTTGCA 1567 Query 14568 CCTCTGAGTAAAATCTTTCGGC--CAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625 | || | |||| ||| | ||||||||| || || ||||| || || || || Sbjct 1568 CTTCGTTGGAAAA--GTTCATCAACAAATTTTCGTTTACAATACCGTCGGATGCAGCGAA 1625 Query 14626 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGC 14685 ||||||||||| ||| |||| ||||| | || | || ||| | ||| | |||||| Sbjct 1626 AAATGCCAATACGTTGCTAATGAAGTAACGTTCGTTATCGCTCATTTTATCCCAATCTTT 1685 Query 14686 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATA 14745 ||| | | | |||| || || | ||||| ||| || ||||||||||||| Sbjct 1686 CGCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCCAGAAAGATGCTTCAGCTTTTTTATA 1745 Query 14746 CATTACCCATATTTCTTTAT 14765 |||| ||| || || |||| Sbjct 1746 CATTTGCCAAATATCATTAT 1765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482290455839280