Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq810 122 7e-23 seq775 98.7 8e-16 seq2305 93.3 3e-14 >seq810 Length=26514 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 |||| ||||||||| ||||||||||| | ||| | ||||||||||||||| || Sbjct 7712 GTTGCTTCTTTTTGGATGTTGTAGTCACTAAGTGTACGTCCATCTTCCAATTGTTTACCT 7653 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| ||||||| | ||||||||| || | ||||| || || ||| | ||| || Sbjct 7652 GCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGAATCTTTTGTTTT 7593 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | | ||| ||| ||| || || |||| ||||||| |||| || ||||| ||| Sbjct 7592 ACGTTTTCAATAGTATCAGATGGTTCTACATCAAGGGTGATGGTTTTACCAGTCAAAGTT 7533 Query 18309 TTTACAAAAATTTGCAT 18325 ||||| ||||||||||| Sbjct 7532 TTTACGAAAATTTGCAT 7516 >seq775 Length=28483 Score = 98.7 bits (108), Expect = 8e-16 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 ||||||||||||||| || ||| ||||||| | ||||||||| || | ||||| || Sbjct 10619 ATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTT 10560 Query 18230 ATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289 || || | ||| || || | | ||| ||| ||| || || |||| ||||| Sbjct 10559 GTCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGAGTGAT 10500 Query 18290 GCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA 18331 | |||| || |||||||||||||| ||||||||||| |||| Sbjct 10499 GGTTTTACCAGTCAATGTTTTTACGAAAATTTGCATGATTAA 10458 >seq2305 Length=8964 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || |||| ||| | || | || | ||||| |||||||||||| |||||||| Sbjct 1544 CCACCACGTAATCTTAAAACTAAATGCAATGTTGCTTCTTTTTGAATATTGTAGTCACTA 1485 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||||||||||||||| ||| | || | | ||||||||| || Sbjct 1484 AGTGTACGCCCATCTTCCAATTGTTTGCCTGCAAATATCAAACGTTGTTGATCTGGTGGG 1425 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| |||| ||| || || | | ||| ||| ||| || || Sbjct 1424 ATACCTTCTTTATCTTGTATTTTTTGTTTAACGTTTTCAATAGTATCAGACGGTTCTACA 1365 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGT 18307 |||| |||||| |||| || |||||||| Sbjct 1364 TCAAGCGTGATGGTTTTCCCAGTCAATGT 1336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379301715709770