Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq8698 140 3e-28 seq769 125 6e-24 seq810 114 1e-20 seq775 96.9 3e-15 seq2305 89.7 5e-13 >seq8698 Length=1787 Score = 140 bits (154), Expect = 3e-28 Identities = 389/590 (66%), Gaps = 10/590 (2%) Strand=Plus/Minus Query 57549 TTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGG 57608 || || ||| || || || |||||| | ||||| ||||| || |||||||| || ||| Sbjct 1778 TTCCCAATTCAACATAATGATATTTGGCAAATGTATAAAAAAGCTGAAGCATCTTTCTGG 1719 Query 57609 ACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCT 57668 || | ||||| ||||| || | | ||| || ||||||||| | | || Sbjct 1718 ACTGCGGAAGAGTTAGACTTGGCACAAGATGCGAAAGATTGGGATAAAATGAGCGATAAC 1659 Query 57669 GAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAAC 57728 || | | || |||| |||| ||||| |||||||| |||||||| |||||||| ||| Sbjct 1658 GAACGTTACTTCATTAGCAACGTATTGGCATTTTTCGCTGCATCCGACGGTATTGTAAAC 1599 Query 57729 GAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTAC 57788 || |||||| | | ||||| | |||||||||||| | || || | || || || Sbjct 1598 GAAAATTTGTTGATGAACTTTTCCAACGAAGTGCAAGTGCCTGAAGCACGTTGTTTCTAT 1539 Query 57789 GGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGA---- 57844 || |||||| | || || ||||| | ||| ||||| ||||||| | | || || Sbjct 1538 GGCTTTCAAATCGCTATCGAAAATATTCATGCAGAAGTGTATTCCTTGTTAATAGACACT 1479 Query 57845 TACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCC 57904 ||| | ||| | || | | || | ||||| | |||| || || || || ||||| Sbjct 1478 TACATTCGTAATGGTCCA-GA--AAAAACG-CGTTTGTTGAATGCTATTGATACAATCGA 1423 Query 57905 CGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTT 57964 || || | || ||||| |||| | |||| || | || || |||| Sbjct 1422 TGCCGTCAAAGAAAAAGCAGAATGGTGCTTGCGTTGGACCAACGCAGACAACGCATCGTT 1363 Query 57965 CGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGC 58024 ||| ||| | | | || ||||| || |||||||| ||||| || ||| Sbjct 1362 CGCAGAGCGCGTCGTTGCATTCGCTGCGTGTGAAGGTATCTTCTTCAGTGGTTCCTTCTG 1303 Query 58025 GGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGC-AACGAGT 58083 || | |||||| | || ||||| || ||||||| || | | |||| | ||||| | Sbjct 1302 TGCCGTGTTTTGGTTAAAAAAACGTGGTATGATGCCAGG-TTTATGTTTTTCAAACGAAT 1244 Query 58084 TGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTAC 58133 |||| || || || || ||| | ||| |||||| || ||| || | ||| Sbjct 1243 TGATTTCACGTGATGAAGGTTTGCATTGTGATTTCGCATGCTTATTATAC 1194 >seq769 Length=28997 Score = 125 bits (138), Expect = 6e-24 Identities = 309/458 (67%), Gaps = 17/458 (4%) Strand=Plus/Minus Query 22433 AAATCTTTGACCAGATGACGGTTCACCACTTG-AAACTCGCCGGACAAG-ACGCGGCGTT 22490 |||||||| | | ||| ||| || || || ||| || |||| |||| || ||||| | Sbjct 13611 AAATCTTTCAATAAATGTTTGTTAAC-ACATGTAAATTCACCGG-CAAGTACACGGCGAT 13554 Query 22491 GGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCG 22550 ||| || ||||| ||| | ||||| ||| |||| ||||| |||| || || | ||| | Sbjct 13553 TGTACATATTGGAAGTGTATGGTTCAAAACATTCGTTGTTGCCCATAATTTGCGAGGTAG 13494 Query 22551 AAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTG--CTTTGAAATTTT 22608 | || || ||||| || || | |||| |||||||| | || || |||||| ||| Sbjct 13493 ATGCAGTTGGCATTGGTGCAACTAGTAAGGAGTTTCTTACACCATGTTCTTTGATATTAG 13434 Query 22609 ACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTA 22668 | | | | | | | ||| ||||| ||||||| || || || || ||||||||| Sbjct 13433 -CGCGTAATCCT-GCCCAATCCCAACGATCGGATGGAGTGACGTT---CCACATATCTGG 13379 Query 22669 TTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATA---TAT 22725 ||| || | || || | || ||||||||||| |||| ||| |||||| | | | Sbjct 13378 TTGTAAAATTCCTTTGCTTACTGGACTGCCTTCGTATGTTTTGTATGGACCAAAACGTTT 13319 Query 22726 CGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTT 22785 || | ||| || ||| || || | | || || || || ||||| | || Sbjct 13318 TGCCTC---TTCACATGACGCACTTAATGCTGCAAAGTAAATCGTTTCAAAGATGTCTTT 13262 Query 22786 GTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGC 22845 |||||||| || || |||||| | ||||| |||||||| | || || || || Sbjct 13261 GTTCAATTGCAATGCAGCTGGGCTTTCAAATGGCATGCGCATCATGATAAATGCATCTGC 13202 Query 22846 CATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCA 22883 | ||| ||||| |||| ||| || |||| || | ||| Sbjct 13201 TAAACCTTGAACTCCTAAACCAATTGGTCTGTGTCTCA 13164 >seq810 Length=26514 Score = 114 bits (126), Expect = 1e-20 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||||||||| ||| |||| || ||||| |||||| | || || ||||| || Sbjct 7515 CATGCAAATTTTCGTAAAAACTTTGACTGGTAAAACCATCACCCTTGATGTAGAACCATC 7574 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | |||| || ||||| | || ||||| ||||| | || || || || Sbjct 7575 TGATACTATTGAAAACGTAAAACAAAAGATTCAAGACAAAGAAGGAATTCCACCAGATCA 7634 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 || ||||| || || || || ||||| |||||||| | | | || | || || || | Sbjct 7635 ACAACGTCTTATCTTTGCAGGTAAACAATTGGAAGA-TGGACGTACACTTAGTGACTACA 7693 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 |||| ||||||||| | ||| | ||| | ||| Sbjct 7694 ACATCCAAAAAGAAGCAACTTTACATTTAGTA 7725 >seq775 Length=28483 Score = 96.9 bits (106), Expect = 3e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 ||| || |||||||||||||||||| || |||| || ||||| ||||| | || || | Sbjct 10456 AATTAATCATGCAAATTTTCGTAAAAACATTGACTGGTAAAACCATCACTCTTGATGTAG 10515 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 |||| || || | | | |||| || ||||| | || ||||| ||||| | || | Sbjct 10516 AACCATCTGATACTATTGAAAACGTTAAACAAAAGATCCAAGACAAAGAAGGAATTCCAC 10575 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 | || || || ||||| || || || || ||||| |||||||| Sbjct 10576 CAGATCAACAACGTCTTATCTTTGCAGGTAAACAATTGGAAGA 10618 >seq2305 Length=8964 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/206 (70%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 31180 AATTGAATCAAACATGCAAATTTTCGTAA-AGACTCTGACAGGCAAAACGATCACCGTCG 31238 ||||||| ||||||| ||| | | | |||| |||| || ||||| ||||| | | Sbjct 1304 AATTGAACCAAACATTATTATTATTATCATAGACATTGACTGGGAAAACCATCACGCTTG 1363 Query 31239 ACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCG 31298 | || |||||||| || | | | |||| || ||||| | |||| || || ||||| Sbjct 1364 ATGTAGAACCGTCTGATACTATTGAAAACGTTAAACAAAAAATACAAGATAAAGAAGGTA 1423 Query 31299 TGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTA 31358 | || || || || || ||| | ||||| || |||||||| |||||||| || Sbjct 1424 TCCCACCAGATCAACAACGTTTGATATTTGCAGGCAAACAATTGGAAGATGGGCGTACAC 1483 Query 31359 TGAGCGATTATAACATTCAAAAAGAA 31384 | || || || || |||||||||||| Sbjct 1484 TTAGTGACTACAATATTCAAAAAGAA 1509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445715437756320