Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq769 250 3e-61 seq8698 197 2e-45 >seq769 Length=28997 Score = 250 bits (276), Expect = 3e-61 Identities = 1187/1855 (64%), Gaps = 76/1855 (4%) Strand=Plus/Minus Query 62070 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGC 62129 ||| | ||||||| ||| ||||| || ||||||| ||| ||||| | ||||| ||| Sbjct 13905 GGTCTTGTACGTAAATAATACATACCGGTTTTTAAACCTTTTTTCCATGCATAAAAGTGC 13846 Query 62130 ATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 62189 || |||| ||| | || || |||| || || | ||| | | |||||||||| Sbjct 13845 ATGGAGGTTAATTTACCAGTGCTTGGTGCTGCAATGTGTACATTTAAACTTTGACTTTGA 13786 Query 62190 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAA 62249 || || | || || | ||| || ||||| |||| || || ||||| ||||||||| Sbjct 13785 TCAATATATGCACCACGGTCAGCTGCCATATTTAAAATAGTTTTTTGACTAATTTCCCAT 13726 Query 62250 ATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGT---ATTCTGAATGGATCC 62305 | ||||| || || || | || |||| ||| | ||||| ||| |||| |||||| Sbjct 13725 ACCGTTTTGTATAAATCTTTGTAT-TCTTTTGGCAAGTTTGATACATTTTGAACGGATCC 13667 Query 62306 ACCATCTACCATAATCCTATTC--TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62363 |||||| | ||||| || | |||| | |||| | ||| | | ||||| Sbjct 13666 ACCATCAGCGATAATTTGGTTACGTACATCTGGTG--TCCAAATATTTAATTTGATTAAA 13609 Query 62364 ACTCTAAGGAGATGCGGGTTAACTACTTGGAA-TTCTCCAGACAATACTCTCCGAGTGTA 62422 || | | | ||| |||||| || || || ||| || | | ||| | ||| |||| Sbjct 13608 TCTTTCAATAAATGTTTGTTAAC-ACATGTAAATTCACCGGCAAGTACACGGCGATTGTA 13550 Query 62423 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62482 ||||| || || ||||| | | || || || |||| |||||| | || ||||| Sbjct 13549 CATATTGGAAGTGTATGGTTCAAAACATTCGTTGTTGCCCATAATTTGCGAGGTAGATGC 13490 Query 62483 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCT--GATTTTATCT 62540 ||| ||||| ||||| || | ||| ||||| | ||| ||||||| ||| ||| | Sbjct 13489 AGTTGGCATTGGTGCAACTAGTAAGGAGTTTCTTACACC--ATGTTCTTTGATATTAGCG 13432 Query 62541 TTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGA 62600 || | |||||| |||| |||| || || || ||||| | Sbjct 13431 CGTAATCCTGCCCAATCCCAACGATCGGATGGAGTGACGTTCCACATATCTGGTTGTAAA 13372 Query 62601 ATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTT--CCTTCTCAGCT 62657 || || || || | | || ||| | ||||| | ||||| || | || | || Sbjct 13371 ATTCCTTTGCTTACTGGACTG-CCTTCGTATGTTTTGTATGGACCAAAACGTTTT--GCC 13315 Query 62658 AGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGA 62717 || ||| ||| |||||| | | ||||| ||||||||||| | || || | Sbjct 13314 TCTTCACATGACGCACTTAATGCTGCAAAGTAAATCGTTTCAAAGATGTCTTTGTTCAAT 13255 Query 62718 TCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCT 62777 | ||| | ||||| |||||||| | | ||||| || || ||||| ||| Sbjct 13254 TGCAATGCAGCTGGGCTTTCAAATGGCATGCGCATCATGATAAATGCATCTGCTAAACCT 13195 Query 62778 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 62837 ||||| || | ||| || ||||| |||||| || || |||||||||| | || Sbjct 13194 TGAACTCCTAAACCAATTGGTCTGTGTCTCAAGTTGGAATATTCAGCTTCTTTTACCGGG 13135 Query 62838 TAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTT---TGACCACATCC 62894 || |||| | ||| |||| ||| | ||| || | | |||| | || | || Sbjct 13134 TAGAAATTTACATCAATAACACGATTCAAATT---GATAGTGACTTGTCTTACAATGTCA 13078 Query 62895 T-TCAGTTTGAGAAAATCAAA------------TCGCCCATCTATTACAAACATGTTCAA 62941 | | || |||| | || ||| | || || | | ||| || Sbjct 13077 AATAACATTTGGAAATTGTAAACTGGCTTGTCCTCGTCGCTC-ATGTCCACCATTTTTGG 13019 Query 62942 T--GCA-ACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62998 | ||| | |||||| | ||||| || || | |||| || | | ||||| || || Sbjct 13018 TAAGCAGATAGATGCTAAGTTACAAACAGCAATTTCATCAGGTGCAGTATATTCGATGAT 12959 Query 62999 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63058 ||||||||| | |||||||| || || ||||| || ||||||||||| || || Sbjct 12958 CTCAGTGCATAAATTACTACTTTTAATCGTTCCCAAGTTTTGTTGATTGGATTTACGATT 12899 Query 63059 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63118 ||| ||||| || || | ||| |||| ||||| ||||||| ||| ||| || || Sbjct 12898 ACATGCATCTTTGTACAACATGTATGGCGTACCTGTTTCAACTTGACTTTCAATGAT--- 12842 Query 63119 TTT---CCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCT---TTCTCTTTCGTA 63172 ||| ||| | || | || || | | |||| | | | |||| |||| || Sbjct 12841 TTTAAACCATAATTCTTGTGCACGTACGGT---TCTGTAACCCTTGCCTTCTTTTTCATA 12785 Query 63173 TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA-TCTAGGACATTCAT 63231 | || |||||| |||||| | || ||||| | | ||| || | || ||| Sbjct 12784 TTGATGGTACAATGCTTCGAATTTCTCACCCCACGTCTCATGCAAATCACGTGCAA-CAT 12726 Query 63232 CCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAA 63291 || || | ||| | ||| | ||| || | | || |||||||| || | ||| |||| Sbjct 12725 TTGGGCAAAACAATGTCCATTGTCCATCTGCTTGTACACGTTTCATGAATAAATCTGGAA 12666 Query 63292 TCCAAAGAGCTATA-AATAGATCTCTTGTTCT---ATGTTCCTCGTTTCCTGTATTCTTT 63347 |||| | || ||| || | ||| | || | || ||| || | || ||| ||| Sbjct 12665 TCCACATTGC-ATAGAACAAATCGCGTGCACGTGCATTTTCATCAC--CATG-ATTTTTT 12610 Query 63348 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 63407 |||||||| | ||| | | | ||||| |||||| ||||||||||| || || | | Sbjct 12609 TTAAGATCTAAAAACTCGAAGACATCAGCATGCCATGGTTCCAAGTAAATAGCAAAAGAA 12550 Query 63408 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 63467 || | ||| || || || |||| ||| | ||||| | ||| | ||||||| | Sbjct 12549 CCTTTTCTTTTACCGCCACCTTGGTCTACGTAACGTGCGGTATCATTGAATACTCTCAGC 12490 Query 63468 ATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGA 63527 ||||| | ||| || || | ||||| |||||| ||| || | |||| | ||| Sbjct 12489 ATTGGGACAATTCCATTACTTGAGCCATTTGTACCGCGGATGTAACTTCCAGTACTACGG 12430 Query 63528 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 63587 || || || | || || || || || |||| |||| || || |||| Sbjct 12429 ATGTTGTGAACACTCAATCCAATACCACCAGCATATTTACTGATTTGCGCACAAGATTTT 12370 Query 63588 AACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGAC 63647 ||||| ||||| || ||| | ||| |||||| |||| || | ||| || | | Sbjct 12369 AACGTATCATAAATACCTCCAATGGAATCATCTTTCATTGCAACCAAAAAGCATGATGCC 12310 Query 63648 ATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC--CATT 63705 | ||| | || | || || ||||| || || || || | || || |||||| |||| Sbjct 12309 AATTGTGGGCGTGGGGTACCAGCATTGAACAATGTCGGCGTTGCATGGGTAAACATCATT 12250 Query 63706 TT--TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTC 63762 || ||| || || ||| || |||||| ||| ||||| | ||| ||||| | Sbjct 12249 TTACTCATCAA----ATCGTATGTGATAATAGCACTGTCGATATCTTCCTTG-TGAATAC 12195 Query 63763 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCA 63822 | ||||| |||||||| | ||| || || |||||||||||||||| |||||||||| Sbjct 12194 CAACTGCAACACGCATAATCATATGTTGTGGTCTTTCAACAATTTCACCATTTATTTTCA 12135 Query 63823 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63877 |||| || | ||| | ||||| |||||||| || | | || ||||| || Sbjct 12134 ACAAATATGCACGTTCTAGCGTTTTGAAACCAAAGTAATCAAACGAGAAGTCACG 12080 >seq8698 Length=1787 Score = 197 bits (218), Expect = 2e-45 Identities = 619/947 (65%), Gaps = 29/947 (3%) Strand=Plus/Plus Query 33228 ATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAG--ACATAACTC 33285 ||||| ||||||| ||| ||| |||||||| || | ||||||| | ||| | Sbjct 844 ATGTTCTTTTAAAAATCACAATCCAAAGAAAATTGTTGATCTTCTTCACTTACACCAACA 903 Query 33286 CCATTTTTTGG-TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGAT 33344 ||| ||||| ||||| || ||||||||||| ||||| || ||||| |||| ||| || Sbjct 904 CCAGCTTTTGAATATTCGCCTACACGTTTTTCAAAAAAGTTGGTTTTACCTTGCAAGGAG 963 Query 33345 ATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCA 33404 || ||||||| |||| || || |||| ||||||| ||||| | || ||| | Sbjct 964 ATCATTTCCATCCAATCGAATGGGTTGGATGCATTGTACATTTTAGATACACCTAATGCT 1023 Query 33405 GAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCT 33464 | ||| | ||| ||| |||||| || ||| ||||| | | ||||| || Sbjct 1024 TGTAACAAACGATCAGCGCAGAATTCAATGTATTGGCACATCAATGTTGAGTTCATGCCA 1083 Query 33465 ATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTT 33524 || | || |||||| | | | | |||| ||| ||| || |||||||| Sbjct 1084 ATCAATTCAACTGGTAATGATTGGGAGACAAATACTTTTTCGATTTCAACCGCATTGCCG 1143 Query 33525 ATAATAAATCTAACGGTTTCTTCACTCGGTG---GATGTAATAAATG---TTTAAACATC 33578 || || | || ||||| || ||| ||| || |||||| ||| | | Sbjct 1144 ATGATTGAATGAATCGTTTCCTCT---GGTAAACGATTTACTAAATGATCTTTGTATAAT 1200 Query 33579 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTG 33638 || ||||||||||| || |||| ||| || || | ||| |||||||| ||||| Sbjct 1201 AAGCATGCGAAATCACAATGCAAACCTTCATCACGTGAAATCAATTCGTTTGAAAAACAT 1260 Query 33639 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAG 33698 | || ||||| | ||||| ||||| | |||||| | || | ||| || || ||| Sbjct 1261 AAACCTGGCATCATACCACGTTTTTTTAACCAAAACACGGCACAGAAGGAACCACTGAAG 1320 Query 33699 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT-G 33757 ||||| ||||| ||||| || |||| | | |||| | | ||| |||| | Sbjct 1321 AAGATACCTTCACACGCAGCGAATGCAACGACGCGCTCTGCGAACGATGCGTTGTCTGCG 1380 Query 33758 TA--TCCACTTTTGAGC-CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG-- 33812 | |||| ||| ||| || || || | ||| || ||||||| || ||| Sbjct 1381 TTGGTCCAACGCA-AGCACCATTCTGCTTTTTCTTTGAC----GGCATCGATTGTATCAA 1435 Query 33813 --GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 ||||| || | | ||||||| || || || ||||| || || || | Sbjct 1436 TAGCATTCAACAAACGCGTTTTTTCTGGACCATTACGAATGTAAGTGTCTATTAACAAGG 1495 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 ||||| ||| | |||||| ||||| || || || ||||| || |||||||| | || | Sbjct 1496 AATACACTTCTGCATGAATATTTTCGATAGCGATTTGAAAGCCATAGAAACAACGTGCTT 1555 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTA--AATTTTCATTCACTATTCCATC 33988 | | | |||||||| | |||| |||| | | ||||||| || || || || || Sbjct 1556 CAGGCACTTGCACTTCGTTGGAAAA--GTTCATCAACAAATTTTCGTTTACAATACCGTC 1613 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 34048 || || ||||| |||||||| | | || || || ||||| | | ||| Sbjct 1614 GGATGCAGCGAAAAATGCCAATACGTTGCTAATGAAGTAACGTTCGTTATCGCTCATTTT 1673 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108 || |||||| || ||||| | | || | |||||| | ||||| || ||||| || Sbjct 1674 ATCCCAATCTTTCGCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCCAGAAAGATGCTTC 1733 Query 34109 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAA 34155 || ||||||||||| | ||| || |||| || ||| |||||||||| Sbjct 1734 AGCTTTTTTATACATTTGCCAAATATCATTATGTTGAATTGGGAAAA 1780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629745596102880