Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq8698 226 3e-54 seq769 159 3e-34 >seq8698 Length=1787 Score = 226 bits (250), Expect = 3e-54 Identities = 629/942 (67%), Gaps = 32/942 (3%) Strand=Plus/Plus Query 11281 TTAAAAATCTATATCCGTAGAAAATATATTCTCTTCTTTATTTGTAAACACCCCCATCTT 11340 ||||||||| |||| ||||||| | ||||||| | || | || | ||| ||| Sbjct 852 TTAAAAATCACAATCCAAAGAAAATTGTTGATCTTCTTCACTTACAC-CAACACCAGCTT 910 Query 11341 TTGA-TATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACT 11399 |||| ||||| | || ||| ||| ||||| || || ||||||| | || || | Sbjct 911 TTGAATATTCGCCTACACGTTTTTCAAAAAAGTTGGTTTTACCTTGCAAGGAGATCATTT 970 Query 11400 CCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACA-ACCTAACTCTGTTAAT 11458 |||| | || || || || ||||| | | |||| | | |||||| || ||| Sbjct 971 CCATCCAATCGAATGGGTTGGATGCATTGTACA-TTTTAGATACACCTAATGCTTGTAAC 1029 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 || | ||| ||| |||||| || || || |||| || | ||||| || || | Sbjct 1030 AAACGATCAGCGCAGAATTCAATGTATTGGCACATCAATGTTGAGTTCATGCCAATCAAT 1089 Query 11519 TCCACCGG-AAT-AGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576 || || || ||| | | |||| ||| ||||| || | |||||||| ||| | Sbjct 1090 TCAACTGGTAATGATTGGGAGACAAATACT--TTTTCGATTTCAACCGCATTGCCGATGA 1147 Query 11577 TCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATG---TTTAAACATTAAACACG 11633 | || || ||||| | | ||| || |||||| ||| | | ||| || | Sbjct 1148 TTGAATGAATCGTTTCCTCTGGTAAACGATTTACTAAATGATCTTTGTATAATAAGCATG 1207 Query 11634 CAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGG 11693 | ||||||||||| |||||||| || | || | ||| || ||||| ||| || | Sbjct 1208 CGAAATCACAATGCAAACCTTCATCACGTGAAATCAATTCGTTTGAAAAACATAAACCTG 1267 Query 11694 GCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTC 11753 |||||| || |||||||||| |||||| | ||| || |||||| ||||| || | Sbjct 1268 GCATCATACCACGTTTTTTTAACCAAAACACGGCACAGAAGGAACCACTGAAGAAGATAC 1327 Query 11754 CCTCCACA-GCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTGT-TGCTAGATA- 11807 | || ||| || || ||||| || || | ||| | | | | |||| ||| | | Sbjct 1328 CTTC-ACACGCAGCGAATGCAACGACGCGCTCTGCGAACGATGCGTTGTCTGC--GTTGG 1384 Query 11808 TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAA 11867 |||| | ||| || ||||| | ||| ||| || ||||| || ||||| || | Sbjct 1385 TCCAACGCAAGCACCATTCTGCTTTTTCTTTGACGGCATCGATTGTATCAATAGCATTCA 1444 Query 11868 ATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTT 11927 | ||| || |||||||| | || | | || || |||||||| || ||||| || Sbjct 1445 ACAAACGCGTTTTTTCTGGACCATTACGAATGTAAGTGTCTATTAACAAGGAATACACTT 1504 Query 11928 CTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC- 11986 ||| |||||||||||| ||||| |||||||| ||||||||||| ||||| || | ||| Sbjct 1505 CTGCATGAATATTTTCGATAGCGATTTGAAAGCCATAGAAACAACGTGCTTCAG-GCACT 1563 Query 11987 TGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCA 12046 || || || |||| | | ||||| || ||||||||||| || |||||| Sbjct 1564 TGCACTTCGTTGGAAAAGTTCATCAACAAATTTTCGTTTACAATACCGTC---GGATGCA 1620 Query 12047 ---AAAAATGCTAGTATATGTT--TTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCC 12101 |||||||| | ||| ||| | || ||||| ||||| | | | |||||||| Sbjct 1621 GCGAAAAATGCCA--ATACGTTGCTAATGAAGTAACGTTCGTTATCGCTCATTTTATCCC 1678 Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161 |||| | ||||| || || |||| ||||| | ||||| ||| ||| | | || Sbjct 1679 AATCTTTCGCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCCAGAAAGATGCTTCAGCTT 1738 Query 12162 GTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAA 12203 ||||||||||| ||| ||||||| || | ||| ||||||| Sbjct 1739 TTTTATACATTTGCCAAATATCATTATGTTGAATTGGGAAAA 1780 >seq769 Length=28997 Score = 159 bits (176), Expect = 3e-34 Identities = 1176/1868 (63%), Gaps = 76/1868 (4%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| |||||||| || | || || | | |||| | | ||||||||| || ||| Sbjct 13935 TCAACCGTGAATTTAATTGCATCTGCCTTTGGTCTTGTACGTAAATAATACATACCGGTT 13876 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTT-----TGCGTA-TGTA 36903 |||| || | ||||| | ||||| ||||| ||| | ||| ||| | || Sbjct 13875 TTTAAACCTTTTTTCCATGCATAAAAGTGCATGGAGGTTAATTTACCAGTGCTTGGTGCT 13816 Query 36904 GGATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCT 36963 | | | | || || || | |||||||||||| ||| | ||||| | ||| ||| Sbjct 13815 GCAATGTGTACATTTAAACT------TTGACTTTGATCAATATATGCACCACGGTCAGCT 13762 Query 36964 GCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATA 37023 ||||| | ||||||| ||||||| || ||||| |||||||| |||| | ||| || Sbjct 13761 GCCATATTTAAAATAGTTTTTTGACTAATTTCCCATACCGTTTTGTATAAATCTTTG-TA 13703 Query 37024 TTATCT-GGTAAATCTAA---ATGTTGAATAGAACCATTATGTAACACAATTGTATTCTT 37079 || | | || || | | | || ||||| || ||| || | |||| || Sbjct 13702 TTCTTTTGGCAAGTTTGATACATTTTGAACGGATCCACCATCAGCGATAATTTGGTTACG 13643 Query 37080 TATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAAC 37139 || || |||| |||||| | |||| ||| |||||| ||| || ||| | Sbjct 13642 TACATCTGGTGTCCAAATATTTAATTTGATTAAATCTTTCAATAAATGTTTGTTAACA-C 13584 Query 37140 CTGAAAAT-CTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGG 37198 || |||| | || | | ||| | | | || |||||| ||| |||||||||| Sbjct 13583 ATGTAAATTCACCGGCAAGTACACGGCGATTGTACATATTGGAAGTGTATGGTTCAAAAC 13524 Query 37199 ACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGC 37258 | || || || | | ||||| || ||||||||||| ||||||||||| | ||| | | Sbjct 13523 ATTCGTTGTTGCCCATAATTTGCGAGGTAGATGCAGTTGGCATTGGTGCAACTAGTAAGG 13464 Query 37259 TATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTG 37318 ||||| | |||||| || || | || | | ||||||||| ||| | Sbjct 13463 AGTTTCTTACACCATGTTCTTTGATATTAGCGCGTAATCCTGCCCAATCCCAACGATCGG 13404 Query 37319 TTGGGTT--CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTT 37376 ||| | | || ||||||||| ||||| ||| ||||| || ||||| | | Sbjct 13403 ATGGAGTGACGTT--CCACATATCTGGTTGTAAAATTCCTTTGCTTACTGGACTGCCTTC 13346 Query 37377 ATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATA 37436 ||||| | || || || || ||| || ||| || | || ||| ||| | Sbjct 13345 GTATGTTTTGTATGGACCAAAACGTTTTGCCTCTTCACATGACGCACTTAATGCTGCAAA 13286 Query 37437 ATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATG-CAT 37495 || || ||||| || || | | | || ||| ||| || ||| || |||| ||| Sbjct 13285 GTAAATCGTTTCAAAGATGTCTTTGTTCAATTGCAATGCAGCTGGGCTTTCAAATGGCAT 13226 Query 37496 AGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTT 37555 || || | ||||| |||| || ||||| ||||| || | ||| || ||||| ||| Sbjct 13225 -GCGCATCATGATAAATGCATCTGCTAAACCTTGAACTCCTAAACCAATTGGTCTGTGTC 13167 Query 37556 TCTTATTAGATCTAGAC-GATTCTATCACTGGATAATAATTGATATCTATTATTTTATTT 37614 || || || || | | |||| | || || || |||| | ||| || | ||| Sbjct 13166 TCAAGTTGGAA-TATTCAGCTTCTTTTACCGGGTAGAAATTTACATCAATAACACGATTC 13108 Query 37615 AGATTTTTA---ACTAGTATTTTCGT----AATTA--TTCTCAACTTGTCGAA---CATA 37662 | ||| || ||| || || | ||| | || || |||| | | | Sbjct 13107 AAATTGATAGTGACTTGTCTTACAATGTCAAATAACATTTGGAAATTGTAAACTGGCTTG 13048 Query 37663 AATACGT---TATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCA 37719 ||| | | | || | ||| || | |||||| ||| ||||| |||||| Sbjct 13047 TCCTCGTCGCTCATGTCCACCATTTTTGGTAAGCAGATAGATGCTAAGTTACAAACAGCA 12988 Query 37720 ACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTT 37779 | |||||| | || ||| || ||||| || || | |||||| | |||| ||| Sbjct 12987 ATTTCATCAGGTGCAGTATATTCGATGATCTCAGTGCATAAATTACTACTTTTAATCGTT 12928 Query 37780 CCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTT 37839 ||||| || |||||||||||| |||||| | |||||| || | || || ||||| Sbjct 12927 CCCAAGTTTTGTTGATTGGATTTACGATTACATGCATCTTTGTACAACATGTATGGCGTA 12868 Query 37840 CCTTGTTCTATTTGAGCCTCGATAATAGATTT---CCATAAACTTCTTGCTTTAACGATC 37896 ||| ||| | |||| || || || ||| |||||| |||||| | ||| | Sbjct 12867 CCTGTTTCAACTTGACTTTCAATGAT---TTTAAACCATAA--TTCTTG--TGCACGTAC 12815 Query 37897 GCTT---TAAtttttttCTT-TGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCC 37952 | || ||| || ||| | |||| |||| || ||| | || | | || Sbjct 12814 GGTTCTGTAACCCTTGCCTTCTTTTTCATATTGATGGTACAATGCTTCGAATTTCTCACC 12755 Query 37953 CCATACATCGCAT---AATCCTGG---ACATTCGCATGGACACATTAGAGACCATTCTTC 38006 ||| | || ||| |||| | ||||| ||| || | | | ||||| | | Sbjct 12754 CCA--CGTCTCATGCAAATCACGTGCAACATT----TGGGCAAAACAATGTCCATTGTCC 12701 Query 38007 ATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTT 38066 |||| || ||| |||| ||| |||||||| || | ||| | |||| || ||||| Sbjct 12700 ATCTGCTTGTACACGTTTCATGAATAAATCTGGAATCCACATTGCATAGAACAAATCGCG 12641 Query 38067 GGTTC-TATATTCTTCGTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCA 38124 | | | ||| ||| | || ||| ||| ||||| | || ||| ||||| | |||| Sbjct 12640 TGCACGTGCATT-TTCATCACCATGATTTTTT-TTAAGATCTAAAAACTCGAAGACATCA 12583 Query 38125 GCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTA 38184 || ||||||||||| | ||||| | | | ||| ||||||| | || || || | Sbjct 12582 GCATGCCATGGTTCCAAGTAAATAGCAAAAGAACCTTTTCTTTTACCGCCACCTTGGTCT 12523 Query 38185 ATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCG 38244 | || | | || | ||| ||| ||| | ||| || || || |||||| | ||| Sbjct 12522 ACGTAACGTGCGGTATCATTGAATACTCTCAGCATTGGGACAATTCCATTACTTGAGCCA 12463 Query 38245 TTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCA 38304 ||| ||||| || ||| | || || || || || | |||||| || ||| Sbjct 12462 TTTGTACCGCGGATGTAACTTCCAGTACTACGGATGTTGTGAACACTCAATCCAATACCA 12403 Query 38305 CCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTG 38364 || |||| ||| ||| || || ||||||||||||| | |||||| | || Sbjct 12402 CCAGCATATTTACTGATTTGCGCACAAGATTTTAACGTATCATAAATACCTCCAATGGAA 12343 Query 38365 TCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTA 38424 ||||| || |||| | | ||| || | || ||| || ||| || || || || Sbjct 12342 TCATCTTTCATTGCAACCAAAAAGCATGATGCCAATTGTGGGCGTGGGGTACCAGCATTG 12283 Query 38425 AATAATGTAGGAGATGCATGTATGAAC--CATTTTTCCGACAAATAATTATATGTTTCTA 38482 || ||||| || | |||||| | ||| |||||| | || ||| ||||| | Sbjct 12282 AACAATGTCGGCGTTGCATGGGTAAACATCATTTTAC--TCATCAAATCGTATGTGATAA 12225 Query 38483 TTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTG 38542 | || || ||||| | ||||||||| | | || | ||| | ||||||||||| Sbjct 12224 TAGCACTGTCGATATCTTCCTTGTGAATACCAACTGCAACACGCATAATCATATGTTGTG 12165 Query 38543 GTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTC 38602 ||||||| | |||| | ||| ||| | | ||| | ||||| ||||| | | Sbjct 12164 GTCTTTCAACAATTTCACCATTTATTTTCAACAAATATGCACGTTCTAGCGTTTTGAAAC 12105 Query 38603 CAAAATAA 38610 |||| ||| Sbjct 12104 CAAAGTAA 12097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468471235902240