Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq769 264 1e-65 seq8698 176 6e-39 >seq769 Length=28997 Score = 264 bits (292), Expect = 1e-65 Identities = 1190/1858 (64%), Gaps = 82/1858 (4%) Strand=Plus/Minus Query 64863 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGC 64922 ||| | ||||||| ||| ||||| || ||||||| ||| ||||| | ||||| ||| Sbjct 13905 GGTCTTGTACGTAAATAATACATACCGGTTTTTAAACCTTTTTTCCATGCATAAAAGTGC 13846 Query 64923 ATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 64982 || |||| ||| | || || |||| || || | ||| | | |||||||||| Sbjct 13845 ATGGAGGTTAATTTACCAGTGCTTGGTGCTGCAATGTGTACATTTAAACTTTGACTTTGA 13786 Query 64983 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAA 65042 || || | || || | ||| || ||||| |||| || || ||||| ||||||||| Sbjct 13785 TCAATATATGCACCACGGTCAGCTGCCATATTTAAAATAGTTTTTTGACTAATTTCCCAT 13726 Query 65043 ATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGT---ATTCTGAATGGATCC 65098 | ||||| || || || | || |||| ||| | ||||| ||| |||| |||||| Sbjct 13725 ACCGTTTTGTATAAATCTTTGTAT-TCTTTTGGCAAGTTTGATACATTTTGAACGGATCC 13667 Query 65099 ACCATCTGCCATAATCCTATTC--TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 65156 |||||| || ||||| || | |||| | |||| | ||| | | ||||| Sbjct 13666 ACCATCAGCGATAATTTGGTTACGTACATCTGGTG--TCCAAATATTTAATTTGATTAAA 13609 Query 65157 ACTCTAAGGAGATGCGGATTAACTACTTG-AAATTCTCCAGACAATACTCTCCGAGTGTA 65215 || | | | ||| ||||| || || |||||| || | | ||| | ||| |||| Sbjct 13608 TCTTTCAATAAATGTTTGTTAAC-ACATGTAAATTCACCGGCAAGTACACGGCGATTGTA 13550 Query 65216 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 65275 ||||| || || ||||| | | | || || || |||| |||||| | || ||||| Sbjct 13549 CATATTGGAAGTGTATGGTTCAAAACATTCGTTGTTGCCCATAATTTGCGAGGTAGATGC 13490 Query 65276 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCT--GATTTTATCT 65333 ||| ||||| ||||| || | ||| ||||| | ||| ||||||| ||| ||| | Sbjct 13489 AGTTGGCATTGGTGCAACTAGTAAGGAGTTTCTTACACC--ATGTTCTTTGATATTAGCG 13432 Query 65334 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGA 65393 || | |||||| |||| |||| || || || ||||| | Sbjct 13431 CGTAATCCTGCCCAATCCCAACGATCGGATGGAGTGACGTTCCACATATCTGGTTGTAAA 13372 Query 65394 ATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTT--CCTTCTCAGCT 65450 || || || || | | || ||| | ||||| | |||||| || | || | || Sbjct 13371 ATTCCTTTGCTTACTGGACTG-CCTTCGTATGTTTTGTATGGACCAAAACGTTTT--GCC 13315 Query 65451 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 65510 |||||| ||| |||||| | | ||||| ||||| ||||| | || || | Sbjct 13314 TCTTCACATGACGCACTTAATGCTGCAAAGTAAATCGTTTCAAAGATGTCTTTGTTCAAT 13255 Query 65511 TCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 65570 | ||| | |||| |||||||| | | ||||| || |||||||| ||| Sbjct 13254 TGCAATGCAGCTGGGCTTTCAAATGGCATGCGCATCATGATAAATGCATCTGCTAAACCT 13195 Query 65571 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 65630 ||||| || | ||| || ||||| |||||| || || |||||||||| | || Sbjct 13194 TGAACTCCTAAACCAATTGGTCTGTGTCTCAAGTTGGAATATTCAGCTTCTTTTACCGGG 13135 Query 65631 TAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTT---TGACCACATCC 65687 || |||| | ||| |||| ||| | ||| || | | |||| | || | || Sbjct 13134 TAGAAATTTACATCAATAACACGATTCAAATT---GATAGTGACTTGTCTTACAATGTCA 13078 Query 65688 T-TCAGTTTGAGAAAATCAAA---------------TCGCTCATCTATTACAAACATGTT 65731 | | || |||| | || |||||||| | | | ||| || Sbjct 13077 AATAACATTTGGAAATTGTAAACTGGCTTGTCCTCGTCGCTCATGT----CCACCATTTT 13022 Query 65732 CAAT--GCA-ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 65788 | ||| | |||||| | |||||||| || | |||| || | | ||||| || Sbjct 13021 TGGTAAGCAGATAGATGCTAAGTTACAAACAGCAATTTCATCAGGTGCAGTATATTCGAT 12962 Query 65789 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 65848 ||||||||||| | |||||||| || || ||||| || ||||||||||| || Sbjct 12961 GATCTCAGTGCATAAATTACTACTTTTAATCGTTCCCAAGTTTTGTTGATTGGATTTACG 12902 Query 65849 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 65908 ||||| ||||| || || | ||| |||| ||||| ||||||| ||| ||| || || Sbjct 12901 ATTACATGCATCTTTGTACAACATGTATGGCGTACCTGTTTCAACTTGACTTTCAATGAT 12842 Query 65909 CGCTTT---CCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTT---TTCTCTTTC 65962 ||| ||| | || | || || | | |||| | ||| |||| |||| Sbjct 12841 ---TTTAAACCATAATTCTTGTGCACGTACGGT---TCTGTAACCCTTGCCTTCTTTTTC 12788 Query 65963 GTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTC 66022 ||| | |||||| |||||| | || ||||| | | ||| || | | Sbjct 12787 ATATTGATGGTACAATGCTTCGAATTTCTCACCCCACGTCTCATGCAAATCACGTGCAAC 12728 Query 66023 ATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGG 66082 || || || | ||| | ||| | ||| || | | || |||||||| || | ||| || Sbjct 12727 ATTTGGGCAAAACAATGTCCATTGTCCATCTGCTTGTACACGTTTCATGAATAAATCTGG 12668 Query 66083 AATCCAAAGAGCTATA-AATAAATCTC-TG---GTTCTATGTTCCTCGTTTCCTGTATTC 66137 |||||| | || ||| || ||||| | || || | || ||| || | || ||| Sbjct 12667 AATCCACATTGC-ATAGAACAAATCGCGTGCACGTGC-ATTTTCATCAC--CATG-ATTT 12613 Query 66138 TTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATA 66197 ||||||||||| | ||| | | | |||| |||||| ||||||||||| || || | | Sbjct 12612 TTTTTAAGATCTAAAAACTCGAAGACATCAGCATGCCATGGTTCCAAGTAAATAGCAAAA 12553 Query 66198 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 66257 || | ||| || || || |||| ||| | ||||| | ||| | |||||| Sbjct 12552 GAACCTTTTCTTTTACCGCCACCTTGGTCTACGTAACGTGCGGTATCATTGAATACTCTC 12493 Query 66258 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCA 66317 | |||||| | ||| ||||| || ||||| || ||| ||| || |||||| | | Sbjct 12492 AGCATTGGGACAATTCCATTACTTGAGCCATTTGTACCGCGGATGTAACTTCCAGTACTA 12433 Query 66318 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 66377 || || || || | || || || || || |||| |||| || || | Sbjct 12432 CGGATGTTGTGAACACTCAATCCAATACCACCAGCATATTTACTGATTTGCGCACAAGAT 12373 Query 66378 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 |||||||||||||| || || | || |||||| |||| || | ||| || Sbjct 12372 TTTAACGTATCATAAATACCTCCAATGGAATCATCTTTCATTGCAACCAAAAAGCATGAT 12313 Query 66438 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC--C 66495 | || ||| | || || || ||||| || || || || | || || |||||| | Sbjct 12312 GCCAATTGTGGGCGTGGGGTACCAGCATTGAACAATGTCGGCGTTGCATGGGTAAACATC 12253 Query 66496 ATTTT--TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAA 66552 ||||| ||| || || ||| || |||||| ||| ||||| | ||| |||| Sbjct 12252 ATTTTACTCATCAA----ATCGTATGTGATAATAGCACTGTCGATATCTTCCTTG-TGAA 12198 Query 66553 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 66612 | || ||||| |||||||| | ||| || || ||||||||||| || | ||||||| Sbjct 12197 TACCAACTGCAACACGCATAATCATATGTTGTGGTCTTTCAACAATTTCACCATTTATTT 12138 Query 66613 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 66670 ||||||| || | ||| | ||||| |||||||| || | | || ||||| || Sbjct 12137 TCAACAAATATGCACGTTCTAGCGTTTTGAAACCAAAGTAATCAAACGAGAAGTCACG 12080 >seq8698 Length=1787 Score = 176 bits (194), Expect = 6e-39 Identities = 616/945 (65%), Gaps = 25/945 (3%) Strand=Plus/Plus Query 35804 ATGTTTCTTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTGAG--ACATAACTC 35861 ||||| ||||||||||| ||| | |||||| || | ||||||| | ||| | Sbjct 844 ATGTTCTTTTAAAAATCACAATCCAAAGAAAATTGTTGATCTTCTTCACTTACACCAACA 903 Query 35862 CCATTTTTTGG-TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGAT 35920 ||| ||||| ||||| || ||||||||||| ||||| || |||||||||| || || Sbjct 904 CCAGCTTTTGAATATTCGCCTACACGTTTTTCAAAAAAGTTGGTTTTACCTTGCAAGGAG 963 Query 35921 ATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCA 35980 || ||||||| |||||||||| ||| |||| || ||||| | || ||| | Sbjct 964 ATCATTTCCATCCAATCGAATGGGTTGGATGCATTGTACATTTTAGATACACCTAATGCT 1023 Query 35981 GAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCT 36040 | ||| | ||| ||| ||||| || ||| ||||| | | ||||| || Sbjct 1024 TGTAACAAACGATCAGCGCAGAATTCAATGTATTGGCACATCAATGTTGAGTTCATGCCA 1083 Query 36041 ATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTT 36100 || | || |||||| | | | | |||| ||| ||| || ||||| | Sbjct 1084 ATCAATTCAACTGGTAATGATTGGGAGACAAATACTTTTTCGATTTCAACCGCATTGCCG 1143 Query 36101 ATAATAGATATTACT-GTTTCTTCACTCGGTG---GATACAATAAATG---TTTAAACAT 36153 || || || || | | ||||| || ||| ||| | |||||| ||| | | Sbjct 1144 ATGATTGA-ATGAATCGTTTCCTCT---GGTAAACGATTTACTAAATGATCTTTGTATAA 1199 Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 || ||||||||||| || || | ||| || || | ||| |||||||| ||||| Sbjct 1200 TAAGCATGCGAAATCACAATGCAAACCTTCATCACGTGAAATCAATTCGTTTGAAAAACA 1259 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 36272 | || ||||| | ||||| ||||| | |||||| | || | || || || ||| | Sbjct 1260 TAAACCTGGCATCATACCACGTTTTTTTAACCAAAACACGG-CACAGAAGGAACCACTGA 1318 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT 36332 |||| || ||||| || || || |||| | | |||| | | || |||| Sbjct 1319 AGAAGATACCTTCACACGCAGCGAATGCAACGACGCGCTCTGCGAACGATGCGTTGTCTG 1378 Query 36333 -GTA--TCCACTTTTGAGC-CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 || |||| ||| ||| || || || | ||| || | ||||| || ||| Sbjct 1379 CGTTGGTCCAACGCA-AGCACCATTCTGCTTTTTCTTTGACGGCATCGATTGTATCAATA 1437 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 ||||| || | | ||||||| || || || || || || || || | | Sbjct 1438 GCATTCAACAAACGCGTTTTTTCTGGACCATTACGAATGTAAGTGTCTATTAACAAGGAA 1497 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 |||| ||| | |||||| ||||| || || |||||||| || |||||||| | || || Sbjct 1498 TACACTTCTGCATGAATATTTTCGATAGCGATTTGAAAGCCATAGAAACAACGTGCTTCA 1557 Query 36509 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTA--AATTTTCATTCACTATTCCGTCAC 36566 | | || ||||| | |||| |||| | | ||||||| || || || ||||| Sbjct 1558 GGCACTTGCACTTCGTTGGAAAA--GTTCATCAACAAATTTTCGTTTACAATACCGTCGG 1615 Query 36567 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTAT 36626 || || ||||| |||||||| | | || || || |||||| | | ||||| Sbjct 1616 ATGCAGCGAAAAATGCCAATACGTTGCTAATGAAGTAACGTTCGTTATCGCTCATTTTAT 1675 Query 36627 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 36686 |||||| || ||||| | | || | |||||| | ||||| || ||||| || | Sbjct 1676 CCCAATCTTTCGCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCCAGAAAGATGCTTCAG 1735 Query 36687 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAA 36731 | ||||||||||| | ||| || |||| || ||||||||| |||| Sbjct 1736 CTTTTTTATACATTTGCCAAATATCATTATGTTGAATTGGGAAAA 1780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658097554394640