Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq810 129 6e-25 seq4707 107 2e-18 seq6389 105 7e-18 seq775 105 7e-18 seq2305 91.5 1e-13 >seq810 Length=26514 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || ||||| || | || | |||||||| ||||| || || || Sbjct 7742 CCTCCACGAAGACGTAATACTAAATGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCACTA 7683 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || | ||||| | |||||||| ||| |||| |||||||| ||||| || || Sbjct 7682 AGTGTACGTCCA-TCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGG 7624 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| || |||||||||| | ||| | || || | || || || Sbjct 7623 AATTCCTTCTTTGTCTTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTAC 7564 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | || || || ||||| ||||||||||| |||||||| Sbjct 7563 ATCAAGGGTGATGGTTTTACCAGTCAAAGTTTTTACGAAAATTTGCAT 7516 >seq4707 Length=625 Score = 107 bits (118), Expect = 2e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || ||||||||||| ||||| |||| || | |||||||| || |||||||| Sbjct 402 CCACCACGTAAACGCAATACTAAATGAAGGGTTGCTTCTTTTTGGATATTATAATCAGAA 343 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| | |||||||||||| |||| |||||||| ||||| ||||| Sbjct 342 AGAGTACGTCCA-TCTTCCAATTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGG 284 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 || ||||||||||| ||| ||||| || | ||| Sbjct 283 AATTCCTTCTTTGTCTTGGATCTTTTGCTTGACCTG 248 >seq6389 Length=961 Score = 105 bits (116), Expect = 7e-18 Identities = 117/151 (77%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCT 139596 || || ||||||||||||||||| || | |||||| ||||||||||| |||||||| ||| Sbjct 13 CCACCACGTAAACGCAAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGCT 72 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | ||| | || | ||||| | |||||||| || | |||| ||||| || || || | Sbjct 73 -AATGTACGTCCA-TCTTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTG 130 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 | || |||||||| || ||| |||||||| Sbjct 131 GAATCCCTTCTTTATCTTGGATCTTTTGTTT 161 >seq775 Length=28483 Score = 105 bits (116), Expect = 7e-18 Identities = 126/169 (75%), Gaps = 3/169 (2%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | |||||||| ||| |||| |||||||| ||||| || || || ||||||||| Sbjct 10618 TCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTTG 10559 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| |||||||| | | ||| | || || | || || || |||| || | Sbjct 10558 TCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGAGTGATG 10499 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTA--TGTTTT 139776 || || || ||||| ||||||||||| |||||||| | ||| |||||| Sbjct 10498 GTTTTACCAGTCAATGTTTTTACGAAAATTTGCAT-GATTAATTGTTTT 10451 >seq2305 Length=8964 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || ||||| | |||||||| || | || | ||||||||||| || || || || Sbjct 1545 GCCACCACGTAATCTTAAAACTAAATGCAATGTTGCTTCTTTTTGAATATTGTAGTCACT 1486 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | | ||||| | ||||| || ||| | |||| |||||| ||||| || || Sbjct 1485 AAGTGTACGCCCATCTTCCAATTGTTTGCCTGCAAATATCAAACGTTGTTGATCTGGTGG 1426 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||||||||||| | | ||| | || || | || || || Sbjct 1425 GATACCTTCTTTATCTTGTATTTTTTGTTTAACGTTTTCAATAGTATCAGACGGTTCTAC 1366 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 |||| || | || || || ||||| || Sbjct 1365 ATCAAGCGTGATGGTTTTCCCAGTCAATGT 1336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496007287483200