Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq8698 205 9e-48 >seq8698 Length=1787 Score = 205 bits (226), Expect = 9e-48 Identities = 605/921 (66%), Gaps = 19/921 (2%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 ||||||||| ||| || ||||| | ||| |||| | | ||| || |||| Sbjct 853 TAAAAATCACAATCCAAAGAAAATTGTTGATCTTCTTCACTTACACCAACACCAGCTTTT 912 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 |||||| | || | ||||||||| ||||| |||||||||| || || || ||||| Sbjct 913 GAATATTCGCCTACACGTTTTTCAAAAAAGTTGGTTTTACCTTGCAAGGAGATCATTTCC 972 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 || |||| ||||| || || | ||| |||| ||||| | || || || Sbjct 973 ATCCAATCGAATGGGTTGGATGCATTGTACATTTTAGATACACCTAATGCTTGTAACAAA 1032 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763 | |||||| || ||||| ||||| |||| || | ||||| || || | || Sbjct 1033 CGATCAGCGCAGAATTCAATGTATTGGCACATCAATGTTGAGTTCATGCCAATCAATTCA 1092 Query 13764 ACAGG-AATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 || || ||| || | || | |||| ||||||| || || || | || || || Sbjct 1093 ACTGGTAATGAT-TGGGAGACAAATACTTTTTCGATTT---CAACCGCATTGCCGATGAT 1148 Query 13823 TGTAATAATC---TCATTAGAAGGAGGATATTTTAGATG---TTTAAAAATTAAACACGC 13876 || | |||| || | | | ||| | || ||| ||| | | ||| || || Sbjct 1149 TGAATGAATCGTTTCCTCTGGTAAACGATTTACTAAATGATCTTTGTATAATAAGCATGC 1208 Query 13877 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13936 ||||||||||| | || ||||| | ||| | |||||||||||| ||| ||||| Sbjct 1209 GAAATCACAATGCAAACCTTCATCACGTGAAATCAATTCGTTTGAAAAACATAAACCTGG 1268 Query 13937 CATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCC 13996 ||||| || ||||||||||||||||| | ||| || || || ||||| || || Sbjct 1269 CATCATACCACGTTTTTTTAACCAAAACACGGCACAGAAGGAACCACTGAAGAAGATACC 1328 Query 13997 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT-ATCC 14055 ||| ||||| || || | | || ||| | |||||||| || | | || | ||| Sbjct 1329 TTCACACGCAGCGAATGCAACGACGCGCTCTGCGAACGATGC-GTTGTCTGCGTTGGTCC 1387 Query 14056 ATTTTCTAGC-CCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14114 | | ||| |||||| | ||||| ||| | ||| ||||| ||||||||||| || Sbjct 1388 A-ACGCAAGCACCATTCTGCTTTTTCTTTGACGGCATCGATTGTATCAATAGCATTCAAC 1446 Query 14115 AAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14174 ||| || ||| | | | |||||| || || || | ||| ||||| ||| Sbjct 1447 AAACGCGTTTTTTCTGGACCATTACGAATGTAAGTGTCTATTAACAAGGAATACACTTCT 1506 Query 14175 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGT 14234 | || || ||||| ||||| || ||||| ||||| || || | ||||| | | ||| Sbjct 1507 GCATGAATATTTTCGATAGCGATTTGAAAGCCATAGAAACAACGTGCTTCAGGCACTTGC 1566 Query 14235 ACTTCCGAGTAAAATCTTTCGGC--CAAATTTTCATTAACTATACCATCACTAGCTGCAA 14292 ||||| | |||| ||| | ||||||||| || || ||||| || || || | Sbjct 1567 ACTTCGTTGGAAAA--GTTCATCAACAAATTTTCGTTTACAATACCGTCGGATGCAGCGA 1624 Query 14293 AAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGG 14352 |||||||||||| ||| |||| ||||| | || | || | | | ||| | |||||| Sbjct 1625 AAAATGCCAATACGTTGCTAATGAAGTAACGTTCGTTATCGCTCATTTTATCCCAATCTT 1684 Query 14353 ATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTAT 14412 ||| | | | |||| || || | ||||| ||| || |||||||||||| Sbjct 1685 TCGCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCCAGAAAGATGCTTCAGCTTTTTTAT 1744 Query 14413 ACATTACCCATATTTCTTTAT 14433 ||||| ||| || || |||| Sbjct 1745 ACATTTGCCAAATATCATTAT 1765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479673155096400