Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq8698 215 5e-51 >seq8698 Length=1787 Score = 215 bits (238), Expect = 5e-51 Identities = 606/919 (66%), Gaps = 15/919 (2%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 ||||||||| ||| || ||||| | ||| |||| | | ||| || |||| Sbjct 853 TAAAAATCACAATCCAAAGAAAATTGTTGATCTTCTTCACTTACACCAACACCAGCTTTT 912 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 |||||| | || | ||||||||||||||| |||||||||| || || || ||||| Sbjct 913 GAATATTCGCCTACACGTTTTTCAAAAAAGTTGGTTTTACCTTGCAAGGAGATCATTTCC 972 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 || |||||||||| || | || | ||| |||| ||||| | || ||| || Sbjct 973 ATCCAATCGAATGGGTTGGATGCATTGTACATTTTAGATACACCTAATGCTTGTAACAAA 1032 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13551 | |||||| || ||||| ||||| |||| || | ||||| || || | || Sbjct 1033 CGATCAGCGCAGAATTCAATGTATTGGCACATCAATGTTGAGTTCATGCCAATCAATTCA 1092 Query 13552 ACAGG-AATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 || || ||| || | | | |||| ||||||| || || || | | || || Sbjct 1093 ACTGGTAATGAT-TGGGAGACAAATACTTTTTCGATTTCAACCGCATTGCCGATGATTGA 1151 Query 13611 CTTAATAATGTCATTAGAAGGAGGATATTTTAGATG---TTTAAAAATTAAACACGCAAA 13667 | ||| | || | | | ||| | || ||| ||| | | ||| || || || Sbjct 1152 ATGAATCGTTTCCTCTGGTAAACGATTTACTAAATGATCTTTGTATAATAAGCATGCGAA 1211 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 ||||||||| | || ||||| | ||| | |||||||||||| ||| |||||||| Sbjct 1212 ATCACAATGCAAACCTTCATCACGTGAAATCAATTCGTTTGAAAAACATAAACCTGGCAT 1271 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 || || ||||||||||||||||| | ||| ||| || || ||||| || || || Sbjct 1272 CATACCACGTTTTTTTAACCAAAACACGGCACAGAAGGAACCACTGAAGAAGATACCTTC 1331 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGC-TTTTTTG-TTTGATATCCAT 13845 | ||||| || || | | || ||| | |||||||| || | || ||| |||| Sbjct 1332 ACACGCAGCGAATGCAACGACGCGCTCTGCGAACGATGCGTTGTCTGCGTTG--GTCCA- 1388 Query 13846 TTTCTAGC-CCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 | ||| |||||| | ||||| ||| | ||| ||||| || || ||||| || || Sbjct 1389 ACGCAAGCACCATTCTGCTTTTTCTTTGACGGCATCGATTGTATCAATAGCATTCAACAA 1448 Query 13905 ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 13964 | | || ||| | | | |||||| || || || | ||| ||||| ||| | Sbjct 1449 ACGCGTTTTTTCTGGACCATTACGAATGTAAGTGTCTATTAACAAGGAATACACTTCTGC 1508 Query 13965 GTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14024 || || ||||| ||||| || ||||| ||||| ||||| | ||||| | | ||| || Sbjct 1509 ATGAATATTTTCGATAGCGATTTGAAAGCCATAGAAACAACGTGCTTCAGGCACTTGCAC 1568 Query 14025 CTCCGAGTAAAATCTTTCTGC--CAAGTTTTCATTAACAATACCATCACTAGCTGCAAAA 14082 || | |||| ||| | ||| ||||| || |||||||| || || || ||| Sbjct 1569 TTCGTTGGAAAA--GTTCATCAACAAATTTTCGTTTACAATACCGTCGGATGCAGCGAAA 1626 Query 14083 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCT 14142 |||||||||| ||| |||| ||||| | || | || | | | ||| | |||||| Sbjct 1627 AATGCCAATACGTTGCTAATGAAGTAACGTTCGTTATCGCTCATTTTATCCCAATCTTTC 1686 Query 14143 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATAC 14202 ||| | | | |||| || || | ||||| ||| || |||||||||||||| Sbjct 1687 GCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCCAGAAAGATGCTTCAGCTTTTTTATAC 1746 Query 14203 ATTACCCATATTTCTTTAT 14221 ||| ||| || || |||| Sbjct 1747 ATTTGCCAAATATCATTAT 1765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478534085335440