Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1282 91.5 1e-13 seq2305 89.7 4e-13 seq734 89.7 4e-13 seq810 84.2 2e-11 >seq1282 Length=23488 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGT-GCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||| |||| ||| || ||||||| || ||| || ||||| | ||||||||||| Sbjct 1299 CCTCCACGAAGTCGTAATACTAAATGGACGGTAGCT-TCTTTTTGAATGTTGTAATCGGA 1241 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 |||||||| || |||||||| | || |||||||| | ||| |||||||| | || Sbjct 1240 TAATGTACGCGTATCTTCCAATTGATAACCTGCAAAAATAATTCGTTGTTGATCTGGTGG 1181 Query 43002 CACA-CCTTCTTT 43013 ||| |||||||| Sbjct 1180 -ACATCCTTCTTT 1169 >seq2305 Length=8964 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGT-GCTCTCCTTTTGCACATTGTAATCGG 42940 ||| ||||| | |||||| || ||||| | || ||| || ||||| | |||||| || Sbjct 1545 GCCACCACGTAATCTTAAAACTAAATGCAATGTTGCT-TCTTTTTGAATATTGTAGTCAC 1487 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 | |||||| | || |||||||||||||| ||||| ||||| || |||||||| | | Sbjct 1486 TAAGTGTACGCCCATCTTCCAATTGTTTGCCTGCAAATATCAAACGTTGTTGATCTGGTG 1427 Query 43001 GCACACCTTCTTTTTC 43016 | | ||||||||| || Sbjct 1426 GGATACCTTCTTTATC 1411 >seq734 Length=33368 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATG-GATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 ||||||||||| | ||| || ||||| ||| ||| |||| ||| | ||| ||||||| Sbjct 10542 GCCTCCACGCAAACGTAATACTAAATGCAATACGGCT-TCCTCTTGTATATTATAATCGG 10484 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 | |||||||| | || || | ||| || || ||||| ||||| || |||||||| | | Sbjct 10483 ATAATGTACGACCATCTTCTAGTTGCTTACCTGCAAATATCAAACGTTGTTGATCTGGTG 10424 Query 43001 GCACACCTTCTTTTTC 43016 | | ||||||||| || Sbjct 10423 GAATACCTTCTTTATC 10408 >seq810 Length=26514 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGT-GCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||| || | ||| || ||||| | ||| ||| || ||||| | ||||| || Sbjct 7742 CCTCCACGAAGACGTAATACTAAATGTAAAGTTGCT-TCTTTTTGGATGTTGTAGTCACT 7684 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||||||| | || ||||||||||| || ||||| || | || |||||||| | || Sbjct 7683 AAGTGTACGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGG 7624 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| | ||| || | ||| || || | || || Sbjct 7623 AATTCCTTCTTTGTCTTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTAC 7564 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || || | |||||| || ||||||||||| Sbjct 7563 ATCAAGGGTGATGGTTTTACCAGTCAAAGTTTTTACGAAAATTTGCAT 7516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381327089922468