Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq769 262 5e-65 seq8698 192 8e-44 >seq769 Length=28997 Score = 262 bits (290), Expect = 5e-65 Identities = 1179/1839 (64%), Gaps = 56/1839 (3%) Strand=Plus/Minus Query 70831 GTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 70890 ||||||| ||| ||||| || ||||||| ||| ||||| | ||||| ||||| Sbjct 13899 GTACGTAAATAATACATACCGGTTTTTAAACCTTTTTTCCATGCATAAAAGTGCATGGAG 13840 Query 70891 GTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATG 70950 |||| ||| | ||| || | || ||||| | ||| | ||||||||||| || Sbjct 13839 GTTAATTTACCAGTGCTTGGTGCTGCAATGTGTACATTTAAACTTTGACTTTGATCAATA 13780 Query 70951 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 71010 | || || | ||| || ||||| |||| || || ||||| ||||||||| | ||| Sbjct 13779 TATGCACCACGGTCAGCTGCCATATTTAAAATAGTTTTTTGACTAATTTCCCATACCGTT 13720 Query 71011 TTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGT---ATTCTGAATGGATCCACCATC 71066 || || || || | || |||| ||| | ||||| ||| |||| |||||||||||| Sbjct 13719 TTGTATAAATCTTTGTAT-TCTTTTGGCAAGTTTGATACATTTTGAACGGATCCACCATC 13661 Query 71067 TGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAG 71126 || ||||| || | ||| |||| | ||| | | ||||| || | | Sbjct 13660 AGCGATAATTTGGTTACGTACATCTGGTGTCCAAATATTTAATTTGATTAAATCTTTCAA 13601 Query 71127 GAGATGAGGATTAACTACTTG-AAATTCTCCAGACAATACTCTACGAGTGTAAATATTAC 71185 | ||| ||||| || || |||||| || | | ||| | ||| |||| ||||| Sbjct 13600 TAAATGTTTGTTAAC-ACATGTAAATTCACCGGCAAGTACACGGCGATTGTACATATTGG 13542 Query 71186 TGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCA 71245 || || ||||| | | || || || |||| |||||| | || |||||||| |||| Sbjct 13541 AAGTGTATGGTTCAAAACATTCGTTGTTGCCCATAATTTGCGAGGTAGATGCAGTTGGCA 13482 Query 71246 TAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATT 71305 | ||||| || | || ||||| | ||||||| | ||| ||| | || | Sbjct 13481 TTGGTGCAACTAGTAAGGAGTTTCTTACACCATGTTCTTTGATATTAGCGCGTAATCCTG 13422 Query 71306 CCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTAC 71365 |||||| |||| |||| ||||| || || || || | Sbjct 13421 CCCAATCCCAACGATCGGATGGAGTGACGTTCCACATATCTGGTTGTAAAATTCCTTTGC 13362 Query 71366 TAGC--GTATGATCCTGCATATGTATCGTATGGTCCTT--CTTTTTCGGCTAGTTCACAA 71421 | | | || ||| | ||||| | |||||| || | |||| || |||||| Sbjct 13361 TTACTGGACTG--CCTTCGTATGTTTTGTATGGACCAAAACGTTTT--GCCTCTTCACAT 13306 Query 71422 CTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT 71481 ||| ||||||| || | ||||| ||||| || || | || || | | ||| Sbjct 13305 GACGCACTTAATGCTGCAAAGTAAATCGTTTCAAAGATGTCTTTGTTCAATTGCAATGCA 13246 Query 71482 TCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCA 71541 | ||||| |||||||| | | ||||| || |||||||| |||||||| || Sbjct 13245 GCTGGGCTTTCAAATGGCATGCGCATCATGATAAATGCATCTGCTAAACCTTGAACTCCT 13186 Query 71542 ATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTA 71601 | ||| || |||||||||||| || ||| |||||||||| | || || |||| Sbjct 13185 AAACCAATTGGTCTGTGTCTCAAGTTGGAATATTCAGCTTCTTTTACCGGGTAGAAATTT 13126 Query 71602 ATATCTATAATTTTATTGAGATTTCT---GACTA---TTACTTTGACCAC-ATCCTTTAG 71654 | ||| |||| ||| | ||| | |||| |||| || | | | | ||| | Sbjct 13125 ACATCAATAACACGATTCAAATTGATAGTGACTTGTCTTACAATGTCAAATAACATTTGG 13066 Query 71655 T--TTGAGAAAATCAAATCTCC-CATCTATTA---CAAACACGTTCA--AGGCA-ACAGA 71705 ||| ||| | | ||| | || | | | | || || | ||| | ||| Sbjct 13065 AAATTGT-AAACTGGCTTGTCCTCGTCGCTCATGTCCACCATTTTTGGTAAGCAGATAGA 13007 Query 71706 TGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAG 71765 ||| | |||||||| || | |||| || | | ||||| || || |||||||| | Sbjct 13006 TGCTAAGTTACAAACAGCAATTTCATCAGGTGCAGTATATTCGATGATCTCAGTGCATAA 12947 Query 71766 ATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 71825 |||||||| || || ||||| || ||||||||||| || ||||| ||||| || Sbjct 12946 ATTACTACTTTTAATCGTTCCCAAGTTTTGTTGATTGGATTTACGATTACATGCATCTTT 12887 Query 71826 ATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT---CCAGAC 71882 || | || | || ||||| ||||||| ||| ||| || || ||| ||| | Sbjct 12886 GTACAACATGTATGGCGTACCTGTTTCAACTTGACTTTCAATGAT---TTTAAACCATAA 12830 Query 71883 GACTCGAGCCTTTATTATATTCTTGTATCTCTT---TTCTCTTTCGTATTGTGTATATAA 71939 || | || || | ||| ||| | ||| |||| |||| ||||| || || Sbjct 12829 TTCTTGTGCACGTACGGT--TCT-GTAACCCTTGCCTTCTTTTTCATATTGATGGTACAA 12773 Query 71940 TCGTTCGAACTCGTCTCCCCAAGCATTGT-CTAATCCAGGACATTCATTCGGACACATCA 71998 | |||||| | || ||||| | | | | |||| | || |||| || || | || Sbjct 12772 TGCTTCGAATTTCTCACCCCACGTCTCATGCAAATCACGTGCAA-CATTTGGGCAAAACA 12714 Query 71999 ATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 72058 ||| ||| | |||||| | | ||| |||||||| || | ||| |||||||| | || | Sbjct 12713 ATGTCCATTGTCCATCTGCTTGTACACGTTTCATGAATAAATCTGGAATCCACATTGC-A 12655 Query 72059 TA-AATAGATCTCTGGTTCTATGC-TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116 || || | ||| | | | ||| | || | || ||| ||||||||||| | || Sbjct 12654 TAGAACAAATCGCGTGCACG-TGCATTTTCATCACCATGATTTTTTTTAAGATCTAAAAA 12596 Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176 | | | | ||||| |||||| ||||||||||| || || | | || | ||| Sbjct 12595 CTCGAAGACATCAGCATGCCATGGTTCCAAGTAAATAGCAAAAGAACCTTTTCTTTTACC 12536 Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 || || || |||| ||| | ||||| | ||| | ||||||| |||||| | ||| || Sbjct 12535 GCCACCTTGGTCTACGTAACGTGCGGTATCATTGAATACTCTCAGCATTGGGACAATTCC 12476 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| || ||||| || ||| ||| || |||||| | ||| || ||| || Sbjct 12475 ATTACTTGAGCCATTTGTACCGCGGATGTAACTTCCAGTACTACGGATGTTGTGAACACT 12416 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | || || || || || |||| |||| || || ||||||||||||||| || Sbjct 12415 CAATCCAATACCACCAGCATATTTACTGATTTGCGCACAAGATTTTAACGTATCATAAAT 12356 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 72416 || | || |||||| |||| || | ||| || | || ||| | || Sbjct 12355 ACCTCCAATGGAATCATCTTTCATTGCAACCAAAAAGCATGATGCCAATTGTGGGCGTGG 12296 Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC--CATTTTTCAGACAGTAGA 72474 || || ||||| || || || || | || || |||||| |||||| | || | | Sbjct 12295 GGTACCAGCATTGAACAATGTCGGCGTTGCATGGGTAAACATCATTTTACT--CATCAAA 12238 Query 72475 TTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCAT 72533 | ||| || |||||| || ||||| | ||| || || || || || |||||||| Sbjct 12237 TCGTATGTGATAATAGCACTGTCGATATCTTCCTTG-TGAATACCAACTGCAACACGCAT 12179 Query 72534 TAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTC 72593 | |||||| || ||||||||||| || | ||||||||||||||| || | ||| Sbjct 12178 AATCATATGTTGTGGTCTTTCAACAATTTCACCATTTATTTTCAACAAATATGCACGTTC 12119 Query 72594 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 72632 | ||||| |||||||| || | | || ||||| || Sbjct 12118 TAGCGTTTTGAAACCAAAGTAATCAAACGAGAAGTCACG 12080 >seq8698 Length=1787 Score = 192 bits (212), Expect = 8e-44 Identities = 620/948 (65%), Gaps = 31/948 (3%) Strand=Plus/Plus Query 41711 ATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAG--ACATAACTC 41768 ||||| ||||||| ||| ||| |||||||| || | ||||||| | ||| | Sbjct 844 ATGTTCTTTTAAAAATCACAATCCAAAGAAAATTGTTGATCTTCTTCACTTACACCAACA 903 Query 41769 CCATTTTTTGG-TATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGAT 41827 ||| ||||| ||||| || ||||||||||| ||||| || || || |||| ||| || Sbjct 904 CCAGCTTTTGAATATTCGCCTACACGTTTTTCAAAAAAGTTGGTTTTACCTTGCAAGGAG 963 Query 41828 ATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCA 41887 || ||||||| |||| || || |||| |||| || ||||| | || ||| | Sbjct 964 ATCATTTCCATCCAATCGAATGGGTTGGATGCATTGTACATTTTAGATACACCTAATGCT 1023 Query 41888 GAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCT 41947 | ||| | ||| ||| |||||| || ||| ||||| | | ||||| || Sbjct 1024 TGTAACAAACGATCAGCGCAGAATTCAATGTATTGGCACATCAATGTTGAGTTCATGCCA 1083 Query 41948 ATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTT 42007 || | || |||||| | | | | |||| ||| ||| || ||||| | Sbjct 1084 ATCAATTCAACTGGTAATGATTGGGAGACAAATACTTTTTCGATTTCAACCGCATTGCCG 1143 Query 42008 ATAATAGATCTTACTGTTTCTTCACTCGGTG---GATACAATAAATG---TTTAAACATC 42061 || || || | ||||| || ||| ||| | |||||| ||| | | Sbjct 1144 ATGATTGAATGAATCGTTTCCTCT---GGTAAACGATTTACTAAATGATCTTTGTATAAT 1200 Query 42062 AAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTG 42121 || ||||||||||| || |||| ||| ||||| | ||| |||||||| ||||| Sbjct 1201 AAGCATGCGAAATCACAATGCAAACCTTCATCACGTGAAATCAATTCGTTTGAAAAACAT 1260 Query 42122 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAA 42180 | || ||||| | ||||| ||||| | |||||| | | | || || || ||| || Sbjct 1261 AAACCTGGCATCATACCACGTTTTTTTAACCAAAACACGG-CACAGAAGGAACCACTGAA 1319 Query 42181 GAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT- 42239 |||||| ||||| || || || |||| | | |||| | | || |||| Sbjct 1320 GAAGATACCTTCACACGCAGCGAATGCAACGACGCGCTCTGCGAACGATGCGTTGTCTGC 1379 Query 42240 GTA--TCCACTTTTGAGC-CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG- 42295 || |||| ||| ||| || || || | ||| || ||||||| || ||| Sbjct 1380 GTTGGTCCAACGCA-AGCACCATTCTGCTTTTTCTTTGAC----GGCATCGATTGTATCA 1434 Query 42296 ---GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 ||||| || | | ||||||| || || || || || || || || | Sbjct 1435 ATAGCATTCAACAAACGCGTTTTTTCTGGACCATTACGAATGTAAGTGTCTATTAACAAG 1494 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 ||||| ||||| |||||| ||||| || || || ||||| || |||||||| | || Sbjct 1495 GAATACACTTCTGCATGAATATTTTCGATAGCGATTTGAAAGCCATAGAAACAACGTGCT 1554 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTA--AATTTTCGTTCACTATTCCGT 42470 || | || || ||||| | |||| ||||| | | |||||||||| || || |||| Sbjct 1555 TCAGGCACTTGCACTTCGTTGGAAAA--GTTCATCAACAAATTTTCGTTTACAATACCGT 1612 Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATT 42530 | || || ||||| |||||||| | | || || || ||||| | | || Sbjct 1613 CGGATGCAGCGAAAAATGCCAATACGTTGCTAATGAAGTAACGTTCGTTATCGCTCATTT 1672 Query 42531 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTT 42590 ||| |||||| || ||||| | | |||| ||||| | ||||| || ||||||| Sbjct 1673 TATCCCAATCTTTCGCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCCAGAAAGATGCTT 1732 Query 42591 CTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAA 42638 | || ||||||||||| | ||| ||||||| || |||||||||||||| Sbjct 1733 CAGCTTTTTTATACATTTGCCAAATATCATTATGTTGAATTGGGAAAA 1780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671062472010960