Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq810 161 1e-34 seq775 123 3e-23 seq2305 122 9e-23 seq4707 113 5e-20 seq6389 100 3e-16 seq4160 89.7 5e-13 seq8698 82.4 8e-11 seq1282 82.4 8e-11 >seq810 Length=26514 Score = 161 bits (178), Expect = 1e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| || |||||||| | || | ||||||||| |||||||| || || Sbjct 7742 CCTCCACGAAGACGTAATACTAAATGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCACTA 7683 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || | ||||| | ||||||||| ||| |||| |||||||| ||||| || || Sbjct 7682 AGTGTACGTCCA-TCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGG 7624 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| ||| |||||||||| | ||| | || || | |||||||| Sbjct 7623 AATTCCTTCTTTGTCTTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTAC 7564 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | || || || ||||| ||||||||||| |||||||| Sbjct 7563 ATCAAGGGTGATGGTTTTACCAGTCAAAGTTTTTACGAAAATTTGCAT 7516 >seq775 Length=28483 Score = 123 bits (136), Expect = 3e-23 Identities = 130/169 (77%), Gaps = 3/169 (2%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| | ||||||||| ||| |||| |||||||| ||||| || || || ||||||||| Sbjct 10618 TCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTTG 10559 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || |||||||| | | ||| | || || | |||||||| |||| ||| | Sbjct 10558 TCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGAGTGATG 10499 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTA--TGTTTT 143196 || || || ||||||||||||||||| |||||||| | ||| |||||| Sbjct 10498 GTTTTACCAGTCAATGTTTTTACGAAAATTTGCAT-GATTAATTGTTTT 10451 >seq2305 Length=8964 Score = 122 bits (134), Expect = 9e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || ||||| | ||||||||||| | ||| | ||||||||| || ||||| || || Sbjct 1545 GCCACCACGTAATCTTAAAACTAAATGCAATGTTGCTTCTTTTTGAATATTGTAGTCACT 1486 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | | ||||| | |||||| || ||| | |||| |||||| ||||| || || Sbjct 1485 AAGTGTACGCCCATCTTCCAATTGTTTGCCTGCAAATATCAAACGTTGTTGATCTGGTGG 1426 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || |||||||| || ||||||||||| | | ||| | || || | |||||||| Sbjct 1425 GATACCTTCTTTATCTTGTATTTTTTGTTTAACGTTTTCAATAGTATCAGACGGTTCTAC 1366 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 |||| || | || || || |||||||| Sbjct 1365 ATCAAGCGTGATGGTTTTCCCAGTCAATGT 1336 >seq4707 Length=625 Score = 113 bits (124), Expect = 5e-20 Identities = 120/156 (77%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || ||||||||||| |||||||||| || | ||||||||| || || ||||| Sbjct 402 CCACCACGTAAACGCAATACTAAATGAAGGGTTGCTTCTTTTTGGATATTATAATCAGAA 343 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| | ||||||||||||| |||| |||||||| ||||| ||||| Sbjct 342 AGAGTACGTCCA-TCTTCCAATTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGG 284 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG 143112 || ||||||||||| || ||||| || | ||| Sbjct 283 AATTCCTTCTTTGTCTTGGATCTTTTGCTTGACCTG 248 >seq6389 Length=961 Score = 100 bits (110), Expect = 3e-16 Identities = 116/151 (77%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 143016 || || |||||||||||||||||||| | |||||||||||||| || || ||||| ||| Sbjct 13 CCACCACGTAAACGCAAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGCT 72 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | ||| | || | ||||| | ||||||||| || | |||| ||||| || || || | Sbjct 73 -AATGTACGTCCA-TCTTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTG 130 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 | || |||||||| || || |||||||| Sbjct 131 GAATCCCTTCTTTATCTTGGATCTTTTGTTT 161 >seq4160 Length=5066 Score = 89.7 bits (98), Expect = 5e-13 Identities = 155/224 (69%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 142952 ACATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAA 143011 ||||| ||||| || ||||| || |||||||| || || ||| || | || || | Sbjct 1098 ACATG-CCTCCGCGCAAACGTAATACTAAATGTATCGTTTGTTCCTTATATAATATGCAT 1040 Query 143012 TCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCG 143071 || || | || | ||||| | |||| || ||||| |||| |||||| ||| | Sbjct 1039 TCACTTACGCACTTCCAATCTTCCAATTGTAGTCCCGCATATATCAAACGTTGTTGACCT 980 Query 143072 GGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGT 143131 ||||| || |||||||| || ||||||||||||| | | | | || || | ||| Sbjct 979 GGAGGGATACCTTCTTTATCTTGTATTTTTTGTTTTATATTTGCAATTGTATCAGATGGT 920 Query 143132 TCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAA 143175 ||||| |||| ||| | || || || || || ||||| || || Sbjct 919 TCTACATCAAGAGTGATGGTTTTACCAGTTAAAGTTTTAACAAA 876 >seq8698 Length=1787 Score = 82.4 bits (90), Expect = 8e-11 Identities = 166/235 (71%), Gaps = 16/235 (7%) Strand=Plus/Minus Query 50635 GCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATG 50694 || || || |||||||||| ||| || | | | ||||| || | |||| | |||||| Sbjct 1136 GCGGTTGAAATCGAAAAAGTATTTGTCTCCCAATCATTACCAGTTGAATTGATTGGCATG 1077 Query 50695 AACGCAGACAT-GATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTT-GTTGCA-G 50751 ||| || |||| ||||||| | |||||||| || ||| | ||| ||| ||| || | Sbjct 1076 AACTCA-ACATTGATGTGCCAATACATTGAATTC--TGCG--CTGATCGTTTGTTACAAG 1022 Query 50752 C--TGGGACAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTT--ATGAATAACAT 50807 | | || | | ||| || |||||| ||||| || || || ||| | | || Sbjct 1021 CATTAGGTGTATCTAAAATGTACAATGCATCCAACCCATT--CGATTGGATGGAAATGAT 964 Query 50808 ATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATA--CAAAA 50860 || ||| | || ||||| |||||||| |||| ||||||||||||||| ||||| Sbjct 963 CTCCTTGCAAGGTAAAACCAACTTTTTTGAAAAACGTGTAGGCGAATATTCAAAA 909 >seq1282 Length=23488 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || || |||||||| | |||| ||||||||| |||||||||||| Sbjct 1299 CCTCCACGAAGTCGTAATACTAAATGGACGGTAGCTTCTTTTTGAATGTTGTAATCGGAT 1240 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | || ||||| | ||| | ||| ||| | || | ||||| ||||| || || Sbjct 1239 AATGTACGCGTATCTTCCAATTGATAACCTGCAAAAATAATTCGTTGTTGATCTGGTGGA 1180 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| | ||| ||| ||||| | | | | | || | || ||| Sbjct 1179 CATCCTTCTTTCTTTTGAATCTTTAATTTTACATCTGCAATCAATTCATTTTGTAATACG 1120 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || ||||| ||||| || || | ||||||| Sbjct 1119 TCCAAAGTGATTGTTTTACCAGTCAACGTTTTAACAAAGAATTGCATA 1072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506956435578720