Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq810 143 2e-29 seq2305 122 6e-23 seq6389 107 1e-18 seq775 100 2e-16 seq4707 84.2 2e-11 seq734 82.4 6e-11 >seq810 Length=26514 Score = 143 bits (158), Expect = 2e-29 Identities = 171/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| |||||||| | || | |||||||| |||||||| || || || | | | || Sbjct 7728 TAATACTAAATGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCACTAAGTGTACGTCCATC 7669 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| |||||||| || || | || | ||||||||| || |||||||||||||||||| Sbjct 7668 TTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTTGTC 7609 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| || ||||| |||| || ||||| ||||||||| | ||| ||||| Sbjct 7608 TTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTACATCAAGGGTGATGGT 7549 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT----ATTTGAAAATAAAAT 15378 |||||| |||| ||||||||| ||||||||||| ||| || ||||||| Sbjct 7548 TTTACCAGTCAAAGTTTTTACGAAAATTTGCATGATGATTATAATATAAAAT 7497 >seq2305 Length=8964 Score = 122 bits (134), Expect = 6e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | ||||||||||||||||| | || | |||||||| || ||||| || | Sbjct 1546 TGCCACCACGTAATCTTAAAACTAAATGCAATGTTGCTTCTTTTTGAATATTGTAGTCAC 1487 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || | | | | ||||| ||||||||||| || |||||||||||||||| || || Sbjct 1486 TAAGTGTACGCCCATCTTCCAATTGTTTGCCTGCAAATATCAAACGTTGTTGATCTGGTG 1427 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || |||||||| || ||||| || || |||| || ||||| ||||| Sbjct 1426 GGATACCTTCTTTATCTTGTATTTTTTGTTTAACGTTTTCAATAGTATCAGACGGTTCTA 1367 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCA 15341 |||| | || |||||||| || |||| Sbjct 1366 CATCAAGCGTGATGGTTTTCCCAGTCA 1340 >seq6389 Length=961 Score = 107 bits (118), Expect = 1e-18 Identities = 148/204 (73%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCG--CG 15208 ||||||||||| | || || |||||||| || || ||||| ||| ||| || | Sbjct 28 AAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGCT---AATGTACGTCCA 84 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 |||||||||||||| || ||| ||||||| ||||||||||| |||||| |||||||| Sbjct 85 TCTTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTGGAATCCCTTCTTTA 144 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || || || || ||| ||||||||||| ||| ||||| ||||| Sbjct 145 TCTTGGATCTTTTGTTTCACACGCGAAATGGTATCGCTTGCCTCTGTATCTAGAGTAATT 204 Query 15329 GTTTTACCTGTCAGAGTTTTTACA 15352 ||||| || || | |||||||||| Sbjct 205 GTTTTTCCAGTTAAAGTTTTTACA 228 >seq775 Length=28483 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| |||||||| || || | || | ||||||||| || |||||||||||||||| Sbjct 10618 TCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTTG 10559 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || || || || || |||| || ||||| ||||||||| | || ||| Sbjct 10558 TCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGAGTGATG 10499 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| |||| |||||||| ||||||||||| Sbjct 10498 GTTTTACCAGTCAATGTTTTTACGAAAATTTGCAT 10464 >seq4707 Length=625 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || |||||||||||||| | |||||||| || || ||||| ||| | | | ||| Sbjct 387 AATACTAAATGAAGGGTTGCTTCTTTTTGGATATTATAATCAGAAAGAGTACGTCCATCT 328 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 || |||||||| ||||| | || | ||||||||| || ||||||||||||||||| Sbjct 327 TCCAATTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCTTTGTC 269 >seq734 Length=33368 Score = 82.4 bits (90), Expect = 6e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| || | ||| | ||| |||||||| | || || | |||||| || |||||| Sbjct 10543 TGCCTCCACGCAAACGTAATACTAAATGCAATACGGCTTCCTCTTGTATATTATAATCGG 10484 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | ||||||| ||| || || || |||||||||||||||| || || Sbjct 10483 ATAATGTACGACCATCTTCTAGTTGCTTACCTGCAAATATCAAACGTTGTTGATCTGGTG 10424 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| |||||||| || ||||| ||| | |||| || ||||| | | Sbjct 10423 GAATACCTTCTTTATCTTGTATTTTTAATTTTGTATTTTCAATTGTATCTGTTGAAGGAA 10364 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAAT 15357 || | || ||||||||||| |||| ||||||||||| || Sbjct 10363 CAAAAAGAGTGATGGTTTTACCAGTCAAGGTTTTTACAAATAT 10321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362138829016386