Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq2305 147 2e-30 seq6389 120 2e-22 seq810 120 2e-22 seq4160 105 5e-18 seq775 96.9 2e-15 seq734 91.5 1e-13 >seq2305 Length=8964 Score = 147 bits (162), Expect = 2e-30 Identities = 156/203 (77%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 43904 AATCTTAACACCAAATGTAGCGT-GCTCTCTTTTTGAATATTATAATCGTTTAATTGACG 43962 |||||||| || ||||| | || ||| |||||||||||||| || || | | | ||| Sbjct 1535 AATCTTAAAACTAAATGCAATGTTGCT-TCTTTTTGAATATTGTAGTCACTAAGTGTACG 1477 Query 43963 CTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTC 44022 | |||| ||||||||||| |||||||||||||| ||||| || || | || | |||||| Sbjct 1476 CCCATCTTCCAATTGTTTGCCTGCAAATATCAAACGTTGTTGATCTGGTGGGATACCTTC 1417 Query 44023 TTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGT 44082 ||||||| ||||||||||| || | ||| |||||| | ||| || ||||| | ||| Sbjct 1416 TTTATCTTGTATTTTTTGTTTAACGTTTTCAATAGTATCAGACGGTTCTACATCAAGCGT 1357 Query 44083 AATTGTTTTACCGGTTAAAGTCT 44105 || ||||| || || || |||| Sbjct 1356 GATGGTTTTCCCAGTCAATGTCT 1334 >seq6389 Length=961 Score = 120 bits (132), Expect = 2e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || || ||||| | ||| |||||||||||||||||||| |||| ||| |||| Sbjct 28 AAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGCTAATGTACGTCCATCT 87 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || |||||||| ||||| |||||||| ||||| ||||| | || | |||||||||||| Sbjct 88 TCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTGGAATCCCTTCTTTATCT 147 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || |||||||| || | || ||||| | ||| ||| | ||||||||| Sbjct 148 TGGATCTTTTGTTTCACACGCGAAATGGTATCGCTTGCCTCTGTATCTAGAGTAATTGTT 207 Query 44090 TTACCGGTTAAAGTCTTCACA 44110 || || |||||||| || ||| Sbjct 208 TTTCCAGTTAAAGTTTTTACA 228 >seq810 Length=26514 Score = 120 bits (132), Expect = 2e-22 Identities = 157/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGT-GCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCAT 43967 ||| || ||||||| || ||| |||||||| || || || || | | | ||| ||| Sbjct 7728 TAATACTAAATGTAAAGTTGCT-TCTTTTTGGATGTTGTAGTCACTAAGTGTACGTCCAT 7670 Query 43968 CGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT 44027 | ||||||||||| |||||||| || | ||||| || || | || | |||||||| | Sbjct 7669 CTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTTGT 7610 Query 44028 CTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTG 44087 || ||| |||||||| || | ||| |||||| | || || ||||| | || || | Sbjct 7609 CTTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTACATCAAGGGTGATGG 7550 Query 44088 TTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||||| || ||||| || || || ||||||||| Sbjct 7549 TTTTACCAGTCAAAGTTTTTACGAAAATTTGCATG 7515 >seq4160 Length=5066 Score = 105 bits (116), Expect = 5e-18 Identities = 158/223 (71%), Gaps = 10/223 (4%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| | ||| | ||| || ||||||| ||| || || |||| ||| | || Sbjct 1093 CCTCCGCGCAAACGTAATACTAAATGTATCGTTTGTTCCTT----ATATAATATGCATTC 1038 Query 43955 AATTGACGCTC-----ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCT 44009 | || |||| | ||| ||||||||| ||| ||| ||||||| ||||| || | Sbjct 1037 ACTT-ACGCACTTCCAATCTTCCAATTGTAGTCCCGCATATATCAAACGTTGTTGACCTG 979 Query 44010 GAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCT 44069 |||| | ||||||||||||| ||||||||||| | | |||| ||||| | || | Sbjct 978 GAGGGATACCTTCTTTATCTTGTATTTTTTGTTTTATATTTGCAATTGTATCAGATGGTT 919 Query 44070 CCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAA 44112 | ||||| | || || |||||||| |||||||| || ||||| Sbjct 918 CTACATCAAGAGTGATGGTTTTACCAGTTAAAGTTTTAACAAA 876 >seq775 Length=28483 Score = 96.9 bits (106), Expect = 2e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 43957 TTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTAC 44016 || ||| |||| ||||||||||| |||||||| || | ||||| || || | || | Sbjct 10628 TTTACGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAAT 10569 Query 44017 ACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATC 44076 |||||||| ||| || |||||||| || | ||| |||||| | || || ||||| Sbjct 10568 TCCTTCTTTGTCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATC 10509 Query 44077 GACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | || || |||||||| || || || || || || ||||||||| Sbjct 10508 AAGAGTGATGGTTTTACCAGTCAATGTTTTTACGAAAATTTGCATG 10463 >seq734 Length=33368 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAG--CGTGCTCTCTTTTTGAATATTATAATCGT 43952 ||||| | ||| | ||| || ||||| | || ||| || | ||| |||||||||||| Sbjct 10541 CCTCCACGCAAACGTAATACTAAATGCAATACG-GCT-TCCTCTTGTATATTATAATCGG 10484 Query 43953 TTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 |||| ||| |||| || | ||| || |||||||||||||| ||||| || || | | Sbjct 10483 ATAATGTACGACCATCTTCTAGTTGCTTACCTGCAAATATCAAACGTTGTTGATCTGGTG 10424 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||||||||||| |||||| ||| | ||| ||||||| | | Sbjct 10423 GAATACCTTCTTTATCTTGTATTTTTAATTTTGTATTTTCAATTGTATCTGTTGAAGGAA 10364 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATAT 44115 || | || || |||||||| || || || || |||||||| Sbjct 10363 CAAAAAGAGTGATGGTTTTACCAGTCAAGGTTTTTACAAATAT 10321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354738054049608