Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq8698 181 9e-41 >seq8698 Length=1787 Score = 181 bits (200), Expect = 9e-41 Identities = 606/927 (65%), Gaps = 27/927 (3%) Strand=Plus/Plus Query 12801 TTTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACAT-AACAGACATT 12859 ||||||||||| ||| | ||||||| | ||| || | | || ||| |||| || Sbjct 851 TTTAAAAATCACAATCCAAAGAAAATTGTTGATCTTCTTCACTT-ACACCAACAC-CAGC 908 Query 12860 TTTTGA-TATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 |||||| ||||||| || | ||||||||||||||| ||||| |||| || || || | Sbjct 909 TTTTGAATATTCGCCTACACGTTTTTCAAAAAAGTTGGTTTTACCTTGCAAGGAGATCAT 968 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC---CCTAATTCTAG 12975 |||||| ||||||| || || || || ||| ||||| | |||||| || | Sbjct 969 TTCCATCCAATCGAATGGGTTG---GATGCATTGTACATTTTAGATACACCTAATGCTTG 1025 Query 12976 TAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTAT 13035 |||||| | ||||| || || ||||| || ||| || ||||||| || || Sbjct 1026 TAACAAACGATCAGCGCAGAATTCAATGTATTGGCACATCAATGTTGAGTTCATGCCAAT 1085 Query 13036 TAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTT---CGAT 13092 |||| || || | | || | | ||| |||||| || ||||| || | |||| Sbjct 1086 CAATTCAACTGGTAATGATTGGGAGACAAATACTTTTTCGATTTCAACCGCATTGCCGAT 1145 Query 13093 AACT--ATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCT-TAAACATCAT 13149 | | ||| || | | |||| | | ||||| || ||| | | || || Sbjct 1146 GATTGAATGAATCGTTTC-----CTCTGGTAAACGATTTACTAAATGATCTTTGTATAAT 1200 Query 13150 A--CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTT 13207 | ||||| |||||||| ||||| |||||||| | || | ||||||||||| | Sbjct 1201 AAGCATGCGAAATCACAATGCAAACCTTCATCACGTGAAATCAATTCGTTTGAAAAACAT 1260 Query 13208 AGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaa 13267 | ||| ||||| | || |||||||| | |||||| | ||| || ||||| || Sbjct 1261 AAACCTGGCATCATACCACGTTTTTTTAACCAAAACACGGCACAGAAGGAACCACTGAAG 1320 Query 13268 aaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACG-TACTATTTTTACT 13326 || || |||||| || || || || | | | || | ||| | | | | | | Sbjct 1321 AAGATACCTTCACACGCAGCGAATGCAACGACGCGCTCTGCGAACGATGCGTTGTCTGCG 1380 Query 13327 CTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGC 13386 | |||| | ||| | |||||||| ||| ||| | || | || || || Sbjct 1381 TTGG-TCCAACGCAAGCACCATTCTGCTTTTTCTTTGACGGCATCGATTGTATCAATAGC 1439 Query 13387 GTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATA 13446 || || ||| ||||||| || | ||| ||||| ||||| || ||| ||| Sbjct 1440 ATTCAACAAACGCGTTTTTTCTGGACCATTACGAATGTAAGTGTCTATTAACAAGGAATA 1499 Query 13447 CATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGA 13506 || ||||| |||||||||||| || || ||||| || ||||| ||||| | || || | Sbjct 1500 CACTTCTGCATGAATATTTTCGATAGCGATTTGAAAGCCATAGAAACAACGTGCTTCAGG 1559 Query 13507 TACCTGAACTTCGGAGTAAAA-TCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAG 13565 || || |||||| | |||| | || | || |||||||| || || ||||| | Sbjct 1560 CACTTGCACTTCGTTGGAAAAGTTCATCAAC-AAATTTTCGTTTACAATACCGTCGGATG 1618 Query 13566 CAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACC 13625 |||| ||||| || | || || |||| || | |||||| || || || || Sbjct 1619 CAGCGAAAAATGCCAATACGTTGCTAATGAAGTAACGTTCGTTATCGCTCATTTTATCCC 1678 Query 13626 AATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 ||||| ||||| || || |||| ||| || | ||||| ||||| || |||| | Sbjct 1679 AATCTTTCGCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCCAGAAAGATGCTTCAGCTT 1738 Query 13686 TCTTATACATCATCCATATATCCTTAT 13712 | |||||||| ||| ||||| |||| Sbjct 1739 TTTTATACATTTGCCAAATATCATTAT 1765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430934359738692