Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq810 145 2e-29 seq6389 123 6e-23 seq2305 114 3e-20 seq775 114 3e-20 seq4707 109 1e-18 seq734 104 5e-17 seq4160 84.2 5e-11 >seq810 Length=26514 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||| |||||| || | |||||| || || || |||||| || || | || ||||| Sbjct 7725 TACTAAATGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCACTAAGTGTACGTCCATCTTC 7666 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | |||||| || ||||| || || | |||||||| || || ||||||||||| || || Sbjct 7665 CAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTG 7606 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||||||| |||||| ||||| | ||||| |||||||| || || || || || || Sbjct 7605 AATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTACATCAAGGGTGATGGTTTT 7546 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| | |||||||| || || ||||| Sbjct 7545 ACCAGTCAAAGTTTTTACGAAAATTTGCAT 7516 >seq6389 Length=961 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| ||| || ||||||||||| ||||||||||| |||| || || | || |||||| Sbjct 31 ACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGCTAATGTACGTCCATCTTCT 90 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | |||||| || || || || | | ||||| || || || || ||||||||||| || Sbjct 91 AATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTGGAATCCCTTCTTTATCTTGG 150 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 |||||| ||| ||| | ||||||||| | ||| ||||| ||||| || || Sbjct 151 ATCTTTTGTTTCACACGCGAAATGGTATCGCTTGCCTCTGTATCTAGAGTAATTGTTTTT 210 Query 104531 CCAGTAAGTGTTTTTACA 104548 ||||| | ||||||||| Sbjct 211 CCAGTTAAAGTTTTTACA 228 >seq2305 Length=8964 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| ||| ||||| | |||||| |||||||| |||||| || || | || ||||| Sbjct 1526 ACTAAATGCAATGTTGCTTCTTTTTGAATATTGTAGTCACTAAGTGTACGCCCATCTTCC 1467 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | |||||| || ||||| || | | |||||||| || || || ||||||||||| || Sbjct 1466 AATTGTTTGCCTGCAAATATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTATCTTGT 1407 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || ||| ||| || ||||| | ||||| |||||||| || || || || || || Sbjct 1406 ATTTTTTGTTTAACGTTTTCAATAGTATCAGACGGTTCTACATCAAGCGTGATGGTTTTC 1347 Query 104531 CCAGTAAGTGT 104541 ||||| | ||| Sbjct 1346 CCAGTCAATGT 1336 >seq775 Length=28483 Score = 114 bits (126), Expect = 3e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| | |||||| || ||||| || || | |||||||| || || ||||||||| Sbjct 10621 CCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCT 10562 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || || || |||||| ||| || ||||| | ||||| |||||||| || || || Sbjct 10561 TTGTCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGAGTG 10502 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || |||||||| | ||||||||| || || ||||| Sbjct 10501 ATGGTTTTACCAGTCAATGTTTTTACGAAAATTTGCAT 10464 >seq4707 Length=625 Score = 109 bits (120), Expect = 1e-18 Identities = 104/132 (79%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||| ||| | || | |||||| || |||||||| ||||| ||||| | || ||||| Sbjct 385 TACTAAATGAAGGGTTGCTTCTTTTTGGATATTATAATCAGAAAGAGTACGTCCATCTTC 326 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | |||||| |||||||| || || | |||||||| ||||| ||||||||||| || || Sbjct 325 CAATTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTG 266 Query 104470 AATC-TTTGCTT 104480 ||| ||||||| Sbjct 265 GATCTTTTGCTT 254 >seq734 Length=33368 Score = 104 bits (114), Expect = 5e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||| ||| ||| | ||| | || |||||||| || |||| || | ||| ||||| Sbjct 10524 TACTAAATGCAATACGGCTTCCTCTTGTATATTATAATCGGATAATGTACGACCATCTTC 10465 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 |||||| || || ||||| || | | |||||||| || || || ||||||||||| || Sbjct 10464 TAGTTGCTTACCTGCAAATATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTG 10405 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 || ||| |||| |||||| | ||||| | | || || || || || || Sbjct 10404 TATTTTTAATTTTGTATTTTCAATTGTATCTGTTGAAGGAACAAAAAGAGTGATGGTTTT 10345 Query 104530 ACCAGTAAGTGTTTTTACAAATATC 104554 |||||| | ||||||||||||||| Sbjct 10344 ACCAGTCAAGGTTTTTACAAATATC 10320 >seq4160 Length=5066 Score = 84.2 bits (92), Expect = 5e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||| | |||| ||| ||| | || | | |||||| | ||||| || ||||||||| Sbjct 1021 TCTTCCAATTGTAGTCCCGCATATATCAAACGTTGTTGACCTGGAGGGATACCTTCTTTA 962 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 || || || ||| ||||| |||| | | ||||| |||||||| || || || || Sbjct 961 TCTTGTATTTTTTGTTTTATATTTGCAATTGTATCAGATGGTTCTACATCAAGAGTGATG 902 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || |||||||| | ||||| ||||| | | ||| ||| Sbjct 901 GTTTTACCAGTTAAAGTTTTAACAAAAAGCGTCATATTG 863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151263475537368