Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq810 104 2e-17 seq2305 87.8 2e-12 seq775 87.8 2e-12 >seq810 Length=26514 Score = 104 bits (114), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 || || || || || ||||| | ||| ||||| | ||| || || || | |||| | Sbjct 7730 CGTAATACTAAATGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCACTAA--GTGTACGTC 7673 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| ||||| || ||||||| | | ||| |||||||| ||||| ||||||| Sbjct 7672 CATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTT 7613 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | ||| ||| || ||| | | ||| |||| | || || |||| |||| Sbjct 7612 TGTCTTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTACATCAAGGGTGA 7553 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||||||| ||||| | |||||| || || || |||||| Sbjct 7552 TGGTTTTACCAGTCAAAGTTTTTACGAAAATTTGCATG 7515 >seq2305 Length=8964 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94757 AACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGAT 94816 |||| ||| | ||| ||| || || || | |||| || || || ||||| || | | Sbjct 1568 AACGTTTTAATGAAAATTTGCATGCCACCACGTAATCTTAAAACTAAATGCAATGTTGCT 1509 Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAA 94874 || ||||| | || || || || | |||| | ||| |||| ||||| || ||| Sbjct 1508 TCTTTTTGAATATTGTAGTCACTAA--GTGTACGCCCATCTTCCAATTGTTTGCCTGCAA 1451 Query 94875 AGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGG 94934 | || || | ||| |||||||| || ||||||||||| || | |||||| || ||| Sbjct 1450 ATATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTATCTTGTATTTTTTGTTTAACGT 1391 Query 94935 CGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 | | ||| |||| | || || |||| |||||||||||| ||||| Sbjct 1390 TTTCAATAGTATCAGACGGTTCTACATCAAGCGTGATGGTTTTCCCAGT 1342 >seq775 Length=28483 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||||| || ||||||| | | ||| |||||||| ||||| |||||||| Sbjct 10619 ATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTT 10560 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || ||| || ||| | | ||| |||| | || || |||| ||||| Sbjct 10559 GTCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGAGTGAT 10500 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTA 95012 |||||| ||||| | ||||| || || || |||||| ||| Sbjct 10499 GGTTTTACCAGTCAATGTTTTTACGAAAATTTGCATGATTA 10459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448239949108560