Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq611 120 5e-23 >seq611 Length=89958 Score = 120 bits (132), Expect = 5e-23 Identities = 189/268 (71%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || ||||| || | | | | || ||||| |||||||| |||||||| ||||| ||| Sbjct 61377 GCAAAACGTCACCGTAAAGTTTTGCGTGATAATATCCAAGGTATCACCAAACCAGCAATC 61318 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | || | | ||||| || || | |||| ||||| |||| ||||||| Sbjct 61317 CGTCGTTTAGCCAGAAGAGGTGGTGTTAAAAGAATCTCCGGATTAATCTACGAAGAGACC 61258 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGA 16611 |||| ||| | || | ||||| || | |||||| |||||| || || || ||||| Sbjct 61257 CGTGGTGTACTTAAAGTATTCCTTGAGTCTGTTATCAGAGATGCTGTTACA-TACACCGA 61199 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || | || ||||| || | |||||| | || || ||||||||||| ||||| Sbjct 61198 GCATGCACGCAGGAAAACTGTTACTGCTATGGATGTTGTATACGCATTGAAACGCCAAGG 61139 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| ||||| || ||||| Sbjct 61138 AAAAACCCTTTACGGTTTCGGTGGTTAA 61111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79066837748178