Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq888 412 4e-110 >seq888 Length=1579 Score = 412 bits (456), Expect = 4e-110 Identities = 507/690 (73%), Gaps = 2/690 (0%) Strand=Plus/Minus Query 138189 ATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCGTCTGGTAGGCATCCGTCCCTACAAC 138248 || ||||| |||||||| || ||||| || | ||| ||| || ||||| |||||| Sbjct 1575 ATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACAAC 1516 Query 138249 GCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCTTTG 138308 ||||| || ||||| | ||| || ||||| ||||| || ||||| || || || | Sbjct 1515 GCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCCACTT 1456 Query 138309 GGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTCCTG 138368 || || || | ||||||||||| || || || ||||| || | ||| ||||| || | Sbjct 1455 GGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTATC 1396 Query 138369 TTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCA 138428 | ||| | || || ||||| |||||||| || |||| || || |||||||| ||||| Sbjct 1395 CTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTAGCT 1336 Query 138429 GGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTG 138488 || | ||||| | || || || ||||| ||||| ||||| ||||||||||| || | Sbjct 1335 GGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACACTT 1276 Query 138489 TATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAA 138548 | |||||||| || ||||| || || || ||| | || || |||| ||||| Sbjct 1275 TTCGAAGATGGTGATGGTTCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAGAG 1216 Query 138549 ACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGT 138608 || || |||||||| || |||||||||| |||||| || || || || | || || Sbjct 1215 ACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACAGATTTTCGGTGTAGCATTCTCA 1156 Query 138609 AATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGT 138668 || |||||||||||||||||||| ||||| || || || || | || | |||| | Sbjct 1155 AACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACCTGTAACAGGATTATGGA-TGTC 1097 Query 138669 AGTA-TTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGA 138727 || | ||||| || |||| | || |||||| || || || ||||||||||||||||| Sbjct 1096 AGCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGCATACGATTTCGTATCGCAAGA 1037 Query 138728 AATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAA 138787 || ||||| || ||||||||||| || || || |||||||| ||||| |||||||| || Sbjct 1036 GATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTACACAAAGAATATTCTTCTTAA 977 Query 138788 TGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCC 138847 |||||| | ||||| |||||||| || ||||| || || |||||| |||| || || Sbjct 976 CGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCACATGAAAACCTTGTATTCCC 917 Query 138848 TGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 ||| || ||| | ||| | || |||||||| Sbjct 916 TGAGGAGGTACTTCCACGTGGAAACGCTCT 887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627896207558400