Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq888 361 6e-95 >seq888 Length=1579 Score = 361 bits (400), Expect = 6e-95 Identities = 510/718 (71%), Gaps = 29/718 (4%) Strand=Plus/Minus Query 172119 ATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATACGTCCTTACAAC 172178 || || || |||||| | || ||||| |||||| | || || ||||| |||||| Sbjct 1575 ATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACAAC 1516 Query 172179 GCACTAGCATTCTCAGCAGTTATTGCAGTATTCACGAGCATCTTT----CTAATATATCC 172234 ||| | || |||||||| |||||| |||||| | |||| | || || || || Sbjct 1515 GCAATTGCGTTCTCAGCTCCTATTGCTGTATTC----GTATCTGTATTCCTTATTTACCC 1460 Query 172235 ATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCAGCAATCTTTCGTTA 172294 | | || ||| | |||||||| ||||||||||| ||||| || | ||| || |||| Sbjct 1459 ACTTGGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTT 1400 Query 172295 TATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATATGATGGGTGT 172354 ||| | ||| | || || |||||||| || ||||| | ||| || ||||||||||| Sbjct 1399 TATCCTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGT 1340 Query 172355 AGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAGTACAGAACAC 172414 ||| || ||||||| | |||| | || ||||| || || |||||||||||| | ||||| Sbjct 1339 AGCTGGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACAC 1280 Query 172415 ATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTACAACTTTCAGAGC 172474 | | | ||||| ||| ||| |||| | || ||| | || Sbjct 1279 ACTTTTCGAAGATGG------------TGATGGT-----TCAAAC----ACATTCCGTGC 1241 Query 172475 ATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACTGCTAACAGATTCTGGTC 172534 || | || ||||| | ||||| ||||| ||| | || |||||| | |||||||| Sbjct 1240 GTTTAACCCAACACAAGCTGAAGAGACTTACTCAATGGTAACAGCTAACCGTTTCTGGTC 1181 Query 172535 ACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGT 172594 |||||| || ||| ||||||| |||||||| | | | |||||| | ||| | ||||| Sbjct 1180 ACAGATTTTCGGTGTAGCATTCTCAAACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGT 1121 Query 172595 ACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTTGCACTTAACCTCAG 172654 |||||| | || | |||| ||| | | ||| | || || | ||| ||||||| | Sbjct 1120 ACCTGTAACAGGATTATGGATGTCAGCACTTGGTGTTGTTGGATTAGCATGTAACCTCCG 1061 Query 172655 AGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTT 172714 |||||||| || ||||| |||||||| | || || ||||| || ||||||||||| || Sbjct 1060 TGCATACGATTTCGTATCGCAAGAGATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATT 1001 Query 172715 CTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCA 172774 |||||| ||||| ||||||||||| |||||||| | ||||||||| || || ||||| Sbjct 1000 CTACACAAAGAATATTCTTCTTAACGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCA 941 Query 172775 ACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACTATAA 172832 || ||||| ||| |||| ||||| || || || | ||||| || ||||| || ||| Sbjct 940 GCCACATGAAAACCTTGTATTCCCTGAGGAGGTACTTCCACGTGGAAACGCTCTTTAA 883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570203604019440