Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq8698 141 1e-28 >seq8698 Length=1787 Score = 141 bits (156), Expect = 1e-28 Identities = 612/956 (64%), Gaps = 43/956 (4%) Strand=Plus/Plus Query 21118 AATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAAT 21177 ||| || ||||||||||| ||| || || || | |||||||| || ||| | Sbjct 843 AATGTTCTTTTAAAAATCACAATCCAAAGAAAATTGTTGATCTTCTTCACTT-ACACCAA 901 Query 21178 TCCCATTTTTTGA-TAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATG 21236 ||| |||||| || || | || | |||||| ||||| || || || |||| ||| | Sbjct 902 CACCAGCTTTTGAATATTCGCCTACACGTTTTTCAAAAAAGTTGGTTTTACCTTGCAAGG 961 Query 21237 ATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTAT-TACAACCCAGT 21295 | || |||||| |||| ||||| || | || | |||||| |||| || | | Sbjct 962 AGATCATTTCCATCCAATCGAATGGGTTGGATGCATTGTACATTTTAGATACA-CCTAAT 1020 Query 21296 TCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATA 21355 || ||| || | ||| || ||||| || ||||| ||||| ||| | ||||| Sbjct 1021 GCTTGTAACAAACGATCAGCGCAGAATTCAATGTATTGGCACATCAATGTTGAGTTCATG 1080 Query 21356 CCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA 21415 || ||||||| || || | | || | | ||| |||||| || || || | Sbjct 1081 CCAATCAATTCAACTGGTAATGATTGGGAGACAAATACTTTTTCGATTTCAACCGCATTG 1140 Query 21416 ACAATTAT---ATTTAT--TATCCTA-GATGTACTAGGGGGATACAATAATTG---TTTA 21466 | || || || || | |||| | | || ||| | ||| || ||| Sbjct 1141 CCGATGATTGAATGAATCGTTTCCTCTGGTAAAC------GATTTACTAAATGATCTTTG 1194 Query 21467 AACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAA 21526 | | || ||||| ||||||||||||||||||||||| | || ||||| || ||| Sbjct 1195 TATAATAAGCATGCGAAATCACAATGCAAACCTTCATCACGTGAAATCAATTCGTTTGAA 1254 Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-AATGCTCC 21585 || |||||| ||||| | || | |||||||||||||| | | | || || | || Sbjct 1255 AAACATAAACCTGGCATCATACCACGTTTTTTTAACCAAAACACGG-CACAGAAGGAACC 1313 Query 21586 TGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTC 21645 ||||| || || ||| ||||| |||||||| | || || || | | || | Sbjct 1314 ACTGAAGAAGATACCTTCACACGCAGCGAATGCAACGACGCGCTCTGCGAACG---ATGC 1370 Query 21646 TTTATCCAATATCCATTTTTCT-------GC-CCATTTTGCCTTTTCTTTAATACAATCA 21697 || || | | || || || ||||| ||| |||||||| | ||| Sbjct 1371 GTTGTC-----TGCGTTGGTCCAACGCAAGCACCATTCTGCTTTTTCTTTGACGGCATCG 1425 Query 21698 ATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNN 21757 |||||||||||||| || || | | | ||||||| ||| ||| Sbjct 1426 ATTGTATCAATAGCATTCAACAAACGCGTTTTTTCTGGACCATTACGAATGTAAGTGTCT 1485 Query 21758 NNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAA 21817 ||||| ||| | ||| |||||||| || || || ||||| || || ||| Sbjct 1486 ATTAACAAGGAATACACTTCTGCATGAATATTTTCGATAGCGATTTGAAAGCCATAGAAA 1545 Query 21818 CATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGC--CAAGTTTTCATTTA 21875 || | ||| || | ||| || ||| |||| ||| | | ||| ||||| |||| Sbjct 1546 CAACGTGCTTCAGGCACTTGCACTTCGTTGGAAAA--GTTCATCAACAAATTTTCGTTTA 1603 Query 21876 CTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTAT 21935 | || || || || || ||||||||||||| || | || || || |||||||||| Sbjct 1604 CAATACCGTCGGATGCAGCGAAAAATGCCAATACGTTGCTAATGAAGTAACGTTCGTTAT 1663 Query 21936 CTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCA-A 21994 | | | ||| | ||||||| ||||| || || |||| ||||| | ||||| | Sbjct 1664 CGCTCATTTTATCCCAATCTTTCGCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCCAGA 1723 Query 21995 AAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAA 22050 ||| | || ||| ||||||||||| ||| |||||||||| | ||||| || Sbjct 1724 AAGAT-GCTTCAGCTTTTTTATACATTTGCCAAATATCATTATGTTGAATTGGGAA 1778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531839990441040