Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq769 250 3e-61 seq8698 205 1e-47 >seq769 Length=28997 Score = 250 bits (276), Expect = 3e-61 Identities = 1186/1855 (64%), Gaps = 76/1855 (4%) Strand=Plus/Minus Query 62019 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGC 62078 ||| | ||||||| ||| ||||| || ||||||| ||| ||||| | ||||| ||| Sbjct 13905 GGTCTTGTACGTAAATAATACATACCGGTTTTTAAACCTTTTTTCCATGCATAAAAGTGC 13846 Query 62079 ATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 62138 || |||| ||| | || || |||| || || | ||| | | |||||||||| Sbjct 13845 ATGGAGGTTAATTTACCAGTGCTTGGTGCTGCAATGTGTACATTTAAACTTTGACTTTGA 13786 Query 62139 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAA 62198 || || | || || | ||| || ||||| |||| || || ||||| ||||||||| Sbjct 13785 TCAATATATGCACCACGGTCAGCTGCCATATTTAAAATAGTTTTTTGACTAATTTCCCAT 13726 Query 62199 ATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGT---ATTCTGAATGGATCC 62254 | ||||| || || || | || |||| ||| | ||||| ||| |||| |||||| Sbjct 13725 ACCGTTTTGTATAAATCTTTGTAT-TCTTTTGGCAAGTTTGATACATTTTGAACGGATCC 13667 Query 62255 ACCATCTGCCATAATCCTATTC--TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62312 |||||| || ||||| || | |||| | |||| | ||| | | ||||| Sbjct 13666 ACCATCAGCGATAATTTGGTTACGTACATCTGGTG--TCCAAATATTTAATTTGATTAAA 13609 Query 62313 ACTCTAAGGAGATGCGGATTAACTACTTG-AAATTCTCCAGACAATACTCTCCGAGTGTA 62371 || | | | ||| ||||| || || |||||| || | | ||| | ||| |||| Sbjct 13608 TCTTTCAATAAATGTTTGTTAAC-ACATGTAAATTCACCGGCAAGTACACGGCGATTGTA 13550 Query 62372 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62431 ||||| || || ||||| | | || || || |||| |||||| | || ||||| Sbjct 13549 CATATTGGAAGTGTATGGTTCAAAACATTCGTTGTTGCCCATAATTTGCGAGGTAGATGC 13490 Query 62432 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCT--GATTTTATCT 62489 ||| ||||| ||||| || | ||| ||||| | ||| ||||||| ||| ||| | Sbjct 13489 AGTTGGCATTGGTGCAACTAGTAAGGAGTTTCTTACACC--ATGTTCTTTGATATTAGCG 13432 Query 62490 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGA 62549 || | |||||| |||| |||| || || || ||||| | Sbjct 13431 CGTAATCCTGCCCAATCCCAACGATCGGATGGAGTGACGTTCCACATATCTGGTTGTAAA 13372 Query 62550 ATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTT--CCTTCTCAGCT 62606 || || || || | | || ||| | ||||| | |||||| || | || | || Sbjct 13371 ATTCCTTTGCTTACTGGACTG-CCTTCGTATGTTTTGTATGGACCAAAACGTTTT--GCC 13315 Query 62607 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 62666 |||||| ||| |||||| | | ||||| ||||| ||||| | || || | Sbjct 13314 TCTTCACATGACGCACTTAATGCTGCAAAGTAAATCGTTTCAAAGATGTCTTTGTTCAAT 13255 Query 62667 TCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCT 62726 | ||| | |||| |||||||| | | ||||| || || ||||| ||| Sbjct 13254 TGCAATGCAGCTGGGCTTTCAAATGGCATGCGCATCATGATAAATGCATCTGCTAAACCT 13195 Query 62727 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 62786 ||||| || | ||| || ||||| |||||| || || |||||||||| | || Sbjct 13194 TGAACTCCTAAACCAATTGGTCTGTGTCTCAAGTTGGAATATTCAGCTTCTTTTACCGGG 13135 Query 62787 TAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTT---TGACCACATCC 62843 || |||| | ||| |||| ||| | ||| || | | |||| | || | || Sbjct 13134 TAGAAATTTACATCAATAACACGATTCAAATT---GATAGTGACTTGTCTTACAATGTCA 13078 Query 62844 T-TCAGTTTGAGAAAATCAAA------------TCGCCCATCTATTACAAACATGTTCA- 62889 | | || |||| | || ||| | || || | | ||| || Sbjct 13077 AATAACATTTGGAAATTGTAAACTGGCTTGTCCTCGTCGCTC-ATGTCCACCATTTTTGG 13019 Query 62890 -AGGCA-ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62947 | ||| | |||||| | |||||||| || | |||| || | | ||||| || || Sbjct 13018 TAAGCAGATAGATGCTAAGTTACAAACAGCAATTTCATCAGGTGCAGTATATTCGATGAT 12959 Query 62948 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63007 ||||||||| | |||||||| || || ||||| || ||||||||||| || || Sbjct 12958 CTCAGTGCATAAATTACTACTTTTAATCGTTCCCAAGTTTTGTTGATTGGATTTACGATT 12899 Query 63008 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63067 ||| ||||| || || | ||| |||| ||||| ||||||| ||| ||| || || Sbjct 12898 ACATGCATCTTTGTACAACATGTATGGCGTACCTGTTTCAACTTGACTTTCAATGAT--- 12842 Query 63068 TTT---CCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCT---TTCTCTTTCGTA 63121 ||| ||| | || | || || | | |||| | | | |||| |||| || Sbjct 12841 TTTAAACCATAATTCTTGTGCACGTACGGT---TCTGTAACCCTTGCCTTCTTTTTCATA 12785 Query 63122 TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATC 63181 | | |||||| |||||| | || ||||| | | ||| || | ||| Sbjct 12784 TTGATGGTACAATGCTTCGAATTTCTCACCCCACGTCTCATGCAAATCACGTGCAACATT 12725 Query 63182 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 63241 || || | ||| | ||| | ||| || | | || |||||||| || | ||| ||||| Sbjct 12724 TGGGCAAAACAATGTCCATTGTCCATCTGCTTGTACACGTTTCATGAATAAATCTGGAAT 12665 Query 63242 CCAAAGAGCTATA-AATAGATCTC-TG---GTTCTATGTTCCTCGTTTCCTGTATTCTTT 63296 ||| | || ||| || | ||| | || || | || ||| || | || ||| ||| Sbjct 12664 CCACATTGC-ATAGAACAAATCGCGTGCACGTGC-ATTTTCATCAC--CATG-ATTTTTT 12610 Query 63297 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 63356 |||||||| | ||| | | | ||||| |||||| ||||||||||| || || | | Sbjct 12609 TTAAGATCTAAAAACTCGAAGACATCAGCATGCCATGGTTCCAAGTAAATAGCAAAAGAA 12550 Query 63357 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 63416 || | ||| || || || |||| ||| | ||||| | ||| | ||||||| | Sbjct 12549 CCTTTTCTTTTACCGCCACCTTGGTCTACGTAACGTGCGGTATCATTGAATACTCTCAGC 12490 Query 63417 ATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGA 63476 ||||| | ||| || || | ||||| |||||| ||| || |||||| | ||| Sbjct 12489 ATTGGGACAATTCCATTACTTGAGCCATTTGTACCGCGGATGTAACTTCCAGTACTACGG 12430 Query 63477 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 63536 || || || | || || || || || |||| |||| || || |||| Sbjct 12429 ATGTTGTGAACACTCAATCCAATACCACCAGCATATTTACTGATTTGCGCACAAGATTTT 12370 Query 63537 AACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGAC 63596 ||||| ||||| ||||| | ||| |||||| |||| || | ||| || | | Sbjct 12369 AACGTATCATAAATACCTCCAATGGAATCATCTTTCATTGCAACCAAAAAGCATGATGCC 12310 Query 63597 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC--CATT 63654 | ||| | || || || ||||| || || || || | || || |||||| |||| Sbjct 12309 AATTGTGGGCGTGGGGTACCAGCATTGAACAATGTCGGCGTTGCATGGGTAAACATCATT 12250 Query 63655 TT--TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTC 63711 || ||| || || ||| || |||||| ||| ||||| | ||| ||||| | Sbjct 12249 TTACTCATCAA----ATCGTATGTGATAATAGCACTGTCGATATCTTCCTTG-TGAATAC 12195 Query 63712 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCA 63771 | ||||| |||||||| | ||| || || ||||||||||| || | |||||||||| Sbjct 12194 CAACTGCAACACGCATAATCATATGTTGTGGTCTTTCAACAATTTCACCATTTATTTTCA 12135 Query 63772 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63826 |||| || | ||| | ||||| |||||||| || | | || ||||| || Sbjct 12134 ACAAATATGCACGTTCTAGCGTTTTGAAACCAAAGTAATCAAACGAGAAGTCACG 12080 >seq8698 Length=1787 Score = 205 bits (226), Expect = 1e-47 Identities = 623/949 (66%), Gaps = 33/949 (3%) Strand=Plus/Plus Query 32950 ATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGAG--ACATAACTC 33007 ||||| ||||||| ||| ||| |||||||| || | |||||||| | ||| | Sbjct 844 ATGTTCTTTTAAAAATCACAATCCAAAGAAAATTGTTGATCTTCTTCACTTACACCAACA 903 Query 33008 CCATTTTTTGG-TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGAT 33066 ||| ||||| ||||| || ||||||||||| ||||| || ||||| |||| ||| || Sbjct 904 CCAGCTTTTGAATATTCGCCTACACGTTTTTCAAAAAAGTTGGTTTTACCTTGCAAGGAG 963 Query 33067 ATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCA 33126 || ||||||| |||| || || |||| |||| || ||||| | || ||| | Sbjct 964 ATCATTTCCATCCAATCGAATGGGTTGGATGCATTGTACATTTTAGATACACCTAATGCT 1023 Query 33127 GAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCT 33186 | ||| | ||| ||| |||||| || ||| ||||| | | ||||| || Sbjct 1024 TGTAACAAACGATCAGCGCAGAATTCAATGTATTGGCACATCAATGTTGAGTTCATGCCA 1083 Query 33187 ATAAGTTTAACTGGAA--GAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTG 33244 || | || |||||| | || | || | |||| ||| ||| || ||||||| Sbjct 1084 ATCAATTCAACTGGTAATGATTGGGAG--ACAAATACTTTTTCGATTTCAACCGCATTGC 1141 Query 33245 TTATAATAGATCTAACGGTTTCTTCACTCGGTG---GATGCAATAAATG---TTTAAACA 33298 || || || || ||||| || ||| ||| | |||||| ||| | | Sbjct 1142 CGATGATTGAATGAATCGTTTCCTCT---GGTAAACGATTTACTAAATGATCTTTGTATA 1198 Query 33299 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACG 33358 || ||||||||||| || |||| ||| || || | ||| | |||||| ||||| Sbjct 1199 ATAAGCATGCGAAATCACAATGCAAACCTTCATCACGTGAAATCAATTCGTTTGAAAAAC 1258 Query 33359 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAA 33418 | || ||||| | ||||| ||||| | |||||| | || | ||| || ||| | Sbjct 1259 ATAAACCTGGCATCATACCACGTTTTTTTAACCAAAACACGGCACAGAAGGAACCACTGA 1318 Query 33419 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT 33478 ||||||| ||||| ||||| || |||| | | |||| | | ||| |||| Sbjct 1319 AGAAGATACCTTCACACGCAGCGAATGCAACGACGCGCTCTGCGAACGATGCGTTGTCTG 1378 Query 33479 -GTA--TCCACTTTTGAGC-CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33534 || |||| ||| ||| || || || | ||| || ||||||| || ||| Sbjct 1379 CGTTGGTCCAACGCA-AGCACCATTCTGCTTTTTCTTTGAC----GGCATCGATTGTATC 1433 Query 33535 ----GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33590 ||||| || | | ||||||| || || || ||||| || || || | Sbjct 1434 AATAGCATTCAACAAACGCGTTTTTTCTGGACCATTACGAATGTAAGTGTCTATTAACAA 1493 Query 33591 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33650 ||||| ||| | |||||| ||||| || || || ||||| || |||||||| | || Sbjct 1494 GGAATACACTTCTGCATGAATATTTTCGATAGCGATTTGAAAGCCATAGAAACAACGTGC 1553 Query 33651 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGC--CAAATTTTCATTCACTATTCCG 33708 || | | || ||||| | |||| |||| | ||||||||| || || || ||| Sbjct 1554 TTCAGGCACTTGCACTTCGTTGGAAAA--GTTCATCAACAAATTTTCGTTTACAATACCG 1611 Query 33709 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 33768 || || || ||||| |||||||| | | || || || ||||| | | | Sbjct 1612 TCGGATGCAGCGAAAAATGCCAATACGTTGCTAATGAAGTAACGTTCGTTATCGCTCATT 1671 Query 33769 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 33828 |||| |||||| || ||||| | | |||| |||||| | ||||| || ||||| Sbjct 1672 TTATCCCAATCTTTCGCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCCAGAAAGATGCT 1731 Query 33829 TCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAA 33877 || || ||||||||||| | ||| || |||| || ||| |||||||||| Sbjct 1732 TCAGCTTTTTTATACATTTGCCAAATATCATTATGTTGAATTGGGAAAA 1780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622875981561360