Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq810 116 4e-21 seq6389 113 4e-20 seq775 95.1 1e-14 >seq810 Length=26514 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || |||||||| || ||||| ||| | |||||| | || ||||| || Sbjct 7516 ATGCAAATTTTCGTAAAAACTTTGACTGGTAAAACCATCACCCTTGATGTAGAACCATCT 7575 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | || |||||||||||| ||||||||||| || || || |||||| Sbjct 7576 GATACTATTGAAAACGTAAAACAAAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAA 7635 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | | || |||||| | ||||||| | | | || ||||| ||| Sbjct 7636 CAACGTCTTATCTTTGCAGGTAAACAATTGGAAGATGGACGTACACTTAGTGACTACAAC 7695 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||||||| | ||| | ||| | || | | ||| | ||||| Sbjct 7696 ATCCAAAAAGAAGCAACTTTACATTTAGTATTACGTCTTCGTGGAGG 7742 >seq6389 Length=961 Score = 113 bits (124), Expect = 4e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 26776 TGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCA 26835 ||| ||||||||| |||||||||||| | || || | || ||| ||| ||| |||| Sbjct 232 TGTATGTAAAAACTTTAACTGGAAAAACAATTACTCTAGATACAGAGGCAAGCGATACCA 173 Query 26836 TCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGAC 26895 | || || ||||||||||| || ||||||||||| || || || |||||| || Sbjct 172 TTTCGCGTGTGAAACAAAAGATCCAAGATAAAGAAGGGATTCCACCAGACCAACAACGAT 113 Query 26896 TCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAACATTCAA 26954 | || | || || |||||| | ||||||| | || | ||| || ||||| |||||| Sbjct 112 TGATATTCGCAGGTAAACAATTAGAAGATG-GACGTACATTAGCTGATTATAATATTCAA 54 Query 26955 AAAGAATCTAC 26965 ||||||||||| Sbjct 53 AAAGAATCTAC 43 >seq775 Length=28483 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || ||||||||||| ||||| ||| | ||||| | || ||||| || Sbjct 10464 ATGCAAATTTTCGTAAAAACATTGACTGGTAAAACCATCACTCTTGATGTAGAACCATCT 10523 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | || ||||||||||| ||||||||||| || || || |||||| Sbjct 10524 GATACTATTGAAAACGTTAAACAAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAA 10583 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 26925 ||| | || || | | || |||||| | ||||||| Sbjct 10584 CAACGTCTTATCTTTGCAGGTAAACAATTGGAAGATG 10620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478607676921120