Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq769 168 2e-36 seq1372 122 2e-22 seq4531 89.7 1e-12 >seq769 Length=28997 Score = 168 bits (186), Expect = 2e-36 Identities = 573/883 (65%), Gaps = 20/883 (2%) Strand=Plus/Plus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 || |||||||| ||||||||| | || || |||||| | ||||||||||| ||||||| Sbjct 12140 ATAAATGGTGAAATTGTTGAAAGACCACAACATATGATTATGCGTGTTGCAGTTGGTATT 12199 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC 363549 || ||| | || || ||| ||||| | | | ||| | || Sbjct 12200 CACAAGGAAGATATCGACAGTGCTATTATCACATACGATTTGATGAGTAAAATGATGTTT 12259 Query 363550 ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGC 363609 || || || ||||| ||| ||| ||||||||| || | ||||| || | || ||| Sbjct 12260 ACCCATGCAACGCCGACATTGTTCAATGCTGGTACCCCACGCCCACAATTGGCATCATGC 12319 Query 363610 TTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGT 363669 ||| | | |||||| || |||||||| | ||||| | ||| || | || |||| Sbjct 12320 TTTTTGGTTGCAATGAAAGATGATTCCATTGGAGGTATTTATGATACGTTAAAATCTTGT 12379 Query 363670 GCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGA---TCCACAATGTTCGT-GC 363725 || | || || |||| || || ||||| || || | ||||| | ||| | Sbjct 12380 GCGCAAATCAGTAAATATGCTGGTGGTATTGG---ATTGAGTGTTCACAACATCCGTAGT 12436 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || | | |||||||| ||||| ||| || | ||||| | || || ||||| | Sbjct 12437 ACTGGA-AGTTACATCCGCGGTACAAATGGCTCAAGTAATGGAATTGTCCCAATGCTGAG 12495 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 || || | |||| || | ||||| ||||| ||||| || || | ||||| | || Sbjct 12496 AGTATTCAATGATACCGCACGTTACGTAGACCAAGGTGGCGGTAAAAGAAAAGGTTCTTT 12555 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 |||||| || | || || ||||| ||| | || |||||| | || || ||||| Sbjct 12556 TGCTATTTACTTGGAACCATGGCATGCTGATGTCTTCGAGTTTTTAGATCTTAAAAAAAA 12615 Query 363906 CACGGGAAAAGAGGAATTGC--GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 || | || || ||| ||||||| ||| ||||||||||| | ||| || | || Sbjct 12616 TCATGGTGATGA--AAATGCACGTGCACGCGATTTGTTCTATGCAATGTGGATTCCAGAT 12673 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATG- 364022 || ||||| || || | |||| | | ||| || | ||||||||| |||| Sbjct 12674 TTATTCATGAAACGTGTACAAGCAGATGGACAATGGACATTGTTTTGCCCA----AATGT 12729 Query 364023 TCCAGGT-CTTTCC--GATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGA 364079 | || || ||| | || |||||||| | | | || | ||| | | ||||| Sbjct 12730 TGCACGTGATTTGCATGAGACGTGGGGTGAGAAATTCGAAGCATTGTACCATCAATATGA 12789 Query 364080 ATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGA 364139 | || || |||| | | || | | ||||| | |||||||| ||||| || Sbjct 12790 AAAAGAAGGCAAGGGTTACAGAACCGTACGTGCACAAGAATTATGGTTTAAAATCATTGA 12849 Query 364140 TTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTC 364199 || |||| ||||| || || || ||||||||||||||| | || || || || || Sbjct 12850 AAGTCAAGTTGAAACAGGTACGCCATACATGTTGTACAAAGATGCATGTAATCGTAAATC 12909 Query 364200 CAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATA 364259 ||| || || || | || || ||| | || || |||| || ||||| || ||||| Sbjct 12910 CAATCAACAAAACTTGGGAACGATTAAAAGTAGTAATTTATGCACTGAGATCATCGAATA 12969 Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATC 364302 || || || || || | ||| || |||||| | || || ||| Sbjct 12970 TACTGCACCTGATGAAATTGCTGTTTGTAACTTAGCATCTATC 13012 >seq1372 Length=19565 Score = 122 bits (134), Expect = 2e-22 Identities = 181/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 145532 TAAATCTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTC 145591 ||||| |||||| ||||||||||| || || || || ||| |||| || ||||||| || Sbjct 2218 TAAATTTTCATCGGAAAATCCAGTACCAATTTTACAAACAGTTTGAAATTCTTCTTCATC 2277 Query 145592 TGGATCATA-CAC-CGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCG 145649 ||||| || || |||| || ||||||||||| ||| || || ||||| ||| Sbjct 2278 TGGATTGTAACATGCGCATAAA--TATGCACCATACCAACCTGTCCGCTTTCCTTTACCA 2335 Query 145650 GTATACCCCGCAATTGGTACAAGATCACAACTATCACCCATTCCGGCAAGATAATCCTTT 145709 | | ||||||||||| | ||| | ||| ||||| || | | |||||| ||| Sbjct 2336 CGCCAAGCTGCAATTGGTACTAAATCCAATGAATCGCCCATACCTTCCAAATAATCTTTT 2395 Query 145710 TTAAGTTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATAGCTAGAGTTATCGTCCAAT 145769 || | ||| | |||||| | |||||| | |||||||| || | | | || || ||| Sbjct 2396 TTCAATTTCAACCAATTTAACGAACGTCTTGATGGTTCGTATGTCGCATCTTCATCTAAT 2455 Query 145770 GATTTTACCATTA 145782 | ||||||||||| Sbjct 2456 GTTTTTACCATTA 2468 >seq4531 Length=1124 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 46895 TAACCACCAACTGATCCAAATGATTTCGTAAAGGTTCCCATCATTACATCAATATTTGAA 46954 |||||||| | | ||||||||||| ||||| || |||||||| ||||| | | || Sbjct 1107 TAACCACCCATTCCACCAAATGATTTTGTAAACGTACCCATCATCACATCGACTTCGGAT 1048 Query 46955 GTGTTAATATTGAAATGTTCAGCAACTCCACGGCCCGTTTGTCCAGTTGCGCCGATAGAA 47014 || | || | |||||| | || ||||| || || || | || || || ||| Sbjct 1047 GTATCAACACCAGCATGTTCTGTAATGCCACGTCCAGTCGCACCCATAGCACCAATGGAA 988 Query 47015 TGTGCTTCATCCAGGTATAAATGCGCACCGTACTTGGTTTTTACTTGAACAATCTCATTG 47074 || |||||||||| |||| || || ||| || | |||||| ||||| || || Sbjct 987 TGCGCTTCATCCAAATATACATATGCTTTGTATTTTTTACATACTTGCACAATTTCTTTT 928 Query 47075 AGATTGCAAAAATCTCCTTCCATTGAATAAATACCTTCA 47113 | || ||| || |||||||| ||||| | ||||||| Sbjct 927 AAATGTGAAATTTCCCCTTCCATGGAATACACACCTTCA 889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303200868952172