Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq6389 122 7e-23 seq810 104 2e-17 seq2305 82.4 7e-11 >seq6389 Length=961 Score = 122 bits (134), Expect = 7e-23 Identities = 152/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 23998 TGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCA 24057 ||| ||||||||| |||||||||||| | ||||| | || ||||| | ||| |||| Sbjct 232 TGTATGTAAAAACTTTAACTGGAAAAACAATTACTCTAGATACAGAGGCAAGCGATACCA 173 Query 24058 TCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGAC 24117 | || || ||||||||||| || |||||||| || || || || ||||| || Sbjct 172 TTTCGCGTGTGAAACAAAAGATCCAAGATAAAGAAGGGATTCCACCAGACCAACAACGAT 113 Query 24118 TGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAACATTCAA 24176 |||| | || || || ||| | ||||||| | || | ||| |||||||| |||||| Sbjct 112 TGATATTCGCAGGTAAACAATTAGAAGATG-GACGTACATTAGCTGATTATAATATTCAA 54 Query 24177 AAAGAATCTACAATTCATTTAGTGTT 24202 ||||||||||| | |||||||| || Sbjct 53 AAAGAATCTACGTTGCATTTAGTTTT 28 >seq810 Length=26514 Score = 104 bits (114), Expect = 2e-17 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || |||||||| || ||||| ||| | || ||| | || || || ||| | Sbjct 7516 ATGCAAATTTTCGTAAAAACTTTGACTGGTAAAACCATCACCCTTGATGTAGAA-CCATC 7574 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || |||||||||||| ||||||||||| || || || ||||| Sbjct 7575 TGATACTATTGAAAACGTAAAACAAAAGATTCAAGACAAAGAAGGAATTCCACCAGATCA 7634 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGCGATTATA 24168 ||| | || || | | || || ||| | |||||| ||| | || | || || || | Sbjct 7635 ACAACGTCTTATCTTTGCAGGTAAACAATTGGAAGATGGACGTACAC-TTAGTGACTACA 7693 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| ||||||||| | || | |||||||| ||| Sbjct 7694 ACATCCAAAAAGAAGCAACTTTACATTTAGTATTA 7728 >seq2305 Length=8964 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 24009 ACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTC 24068 ||||| ||||| ||| | || || | || || || | || || || || | || Sbjct 1336 ACATTGACTGGGAAAACCATCACGCTTGATGTAGAACCGTCTGATACTATTGAAAACGTT 1395 Query 24069 AAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGC 24128 |||||||| || || |||||||| || || || |||||||| | |||| | | Sbjct 1396 AAACAAAAAATACAAGATAAAGAAGGTATCCCACCAGATCAACAACGTTTGATATTTGCA 1455 Query 24129 GGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACA 24188 ||||| ||| | ||||||| | | | || || || || |||||||||||| | ||| Sbjct 1456 GGCAAACAATTGGAAGATGGGCGTACACTTAGTGACTACAATATTCAAAAAGAAGCAACA 1515 Query 24189 ATTCATTTAGTGTTAAGATT 24208 | |||||||| |||||||| Sbjct 1516 TTGCATTTAGTTTTAAGATT 1535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429888076377630