Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq689 140 2e-28 seq4707 111 1e-19 seq810 107 1e-18 seq775 93.3 3e-14 seq6389 89.7 3e-13 >seq689 Length=39137 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 32356 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 32415 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 32416 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 32450 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 34417 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCTTCACAGTACTTGTTCGCTATCGGTCTCTC 34476 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||| || Sbjct 34477 GCCTTTATTTAGCTTT 34492 >seq4707 Length=625 Score = 111 bits (122), Expect = 1e-19 Identities = 119/155 (77%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGT-GCTCTCCTTTTGAATATTGTAATCA 38147 ||||||| | |||||||| || |||||||| || ||| || ||||| ||||| |||||| Sbjct 404 TACCACCACGTAAACGCAATACTAAATGAAGGGTTGCT-TCTTTTTGGATATTATAATCA 346 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || | | |||| | || || |||||||| || ||||| || || ||||||||||| | Sbjct 345 GAAAGAGTACGTCCATCTTCCAATTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGA 286 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCAC 38242 || | ||||||||||| || |||||||| || Sbjct 285 GGAATTCCTTCTTTGTCTTGGATCTTTTGCTTGAC 251 >seq810 Length=26514 Score = 107 bits (118), Expect = 1e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGT-GCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTT 38160 ||| || || ||||| | ||| ||| || ||||| || ||||| ||| | |||| Sbjct 7731 ACGTAATACTAAATGTAAAGTTGCT-TCTTTTTGGATGTTGTAGTCACTAAGTGTACGTC 7673 Query 38161 CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTT 38220 | || || |||||||| || ||||| || || ||||||||||| | || | ||||||| Sbjct 7672 CATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTT 7613 Query 38221 TGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAA 38280 |||| ||| ||||| || || || | | |||||| ||| || || | || | Sbjct 7612 TGTCTTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTACATCAAGGGTGA 7553 Query 38281 TAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | |||||||| ||||| ||||| ||||| || |||||| Sbjct 7552 TGGTTTTACCAGTCAAAGTTTTTACGAAAATTTGCATG 7515 >seq775 Length=28483 Score = 93.3 bits (102), Expect = 3e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 38156 ACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCC 38215 |||| | || || |||||||| || ||||| || || ||||||||||| | || | || Sbjct 10625 ACGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCC 10566 Query 38216 TTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAA 38275 ||||||||| || ||||| || || || | | |||||| ||| || || | Sbjct 10565 TTCTTTGTCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAG 10506 Query 38276 TGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || || |||||||| ||||| ||||| ||||| || |||||| || Sbjct 10505 AGTGATGGTTTTACCAGTCAATGTTTTTACGAAAATTTGCATGATT 10460 >seq6389 Length=961 Score = 89.7 bits (98), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | |||||||| || ||||| | || || ||||||||||| ||||||| Sbjct 12 ACCACCACGTAAACGCAAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGC 71 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || |||| | || ||||||||||| || || ||||| | |||||||| || | || Sbjct 72 TAATGTACGTCCATCTTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTGG 131 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | |||||||| || || ||||| |||||| | | |||| | ||| | | Sbjct 132 AATCCCTTCTTTATCTTGGATCTTTTGTTTCACACGCGAAATGGTAT---CGCTTGCCTC 188 Query 38270 T---TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | |||| ||||| ||||| || || || ||||| || Sbjct 189 TGTATCTAGAGTAATTGTTTTTCCAGTTAAAGTTTTTAC 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334909864482326