Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq810 143 2e-29 seq2305 125 6e-24 seq6389 118 9e-22 seq775 116 3e-21 seq4707 105 6e-18 seq1282 87.8 2e-12 >seq810 Length=26514 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||| |||||||| |||||| ||||||| | || || || | ||| Sbjct 7516 ATGCAAATTTTCGTAAAAACTTTGACTGGTAAAACCATCACCCTTGATGTAGAACCATCT 7575 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || | || ||||| || ||||||||||| |||||||| || ||| Sbjct 7576 GATACTATTGAAAACGTAAAACAAAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAA 7635 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || |||| ||||| || |||||||| ||||||| || || | | || ||||| Sbjct 7636 CAACGTCTTATCTTTGCAGGTAAACAATTGGAAGATGGACGTACACTTAGTGACTACAAC 7695 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||||||| | || |||||||||| || | || | ||||| Sbjct 7696 ATCCAAAAAGAAGCAACTTTACATTTAGTATTACGTCTTCGTGGAGG 7742 >seq2305 Length=8964 Score = 125 bits (138), Expect = 6e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 25015 AGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCAC 25074 |||| ||||| || ||| ||||||| | || || || ||||||| ||||| || Sbjct 1334 AGACATTGACTGGGAAAACCATCACGCTTGATGTAGAACCGTCTGATACTATTGAAAACG 1393 Query 25075 TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTG 25134 | || |||||||| || |||||||| || ||||| || ||||| || | || |||| Sbjct 1394 TTAAACAAAAAATACAAGATAAAGAAGGTATCCCACCAGATCAACAACGTTTGATATTTG 1453 Query 25135 CCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCA 25194 | ||||||||||| ||||||| || || | | || |||||||||||||||||| | | Sbjct 1454 CAGGCAAACAATTGGAAGATGGGCGTACACTTAGTGACTACAATATTCAAAAAGAAGCAA 1513 Query 25195 CGCTACATTTAGTGCTAAG 25213 | | |||||||| |||| Sbjct 1514 CATTGCATTTAGTTTTAAG 1532 >seq6389 Length=961 Score = 118 bits (130), Expect = 9e-22 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 25075 TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTG 25134 |||| ||||| ||| || ||||||||||||||||| |||||||| || | || || | Sbjct 163 TGAAACAAAAGATCCAAGATAAAGAAGGGATTCCACCAGACCAACAACGATTGATATTCG 104 Query 25135 CCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCA 25194 | || |||||||||||||||| || || | | ||||| ||||||||||||||||| | Sbjct 103 CAGGTAAACAATTAGAAGATGGACGTACATTAGCTGATTATAATATTCAAAAAGAATCTA 44 Query 25195 CGCTACATTTAGT 25207 || | |||||||| Sbjct 43 CGTTGCATTTAGT 31 >seq775 Length=28483 Score = 116 bits (128), Expect = 3e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||| || ||||| |||||| ||||||| | || || || | ||| Sbjct 10464 ATGCAAATTTTCGTAAAAACATTGACTGGTAAAACCATCACTCTTGATGTAGAACCATCT 10523 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || | || ||||| ||| ||||||||||| |||||||| || ||| Sbjct 10524 GATACTATTGAAAACGTTAAACAAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAA 10583 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 || || |||| ||||| || |||||||| ||||||| Sbjct 10584 CAACGTCTTATCTTTGCAGGTAAACAATTGGAAGATG 10620 >seq4707 Length=625 Score = 105 bits (116), Expect = 6e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 25077 AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCC 25136 |||||||| ||| ||||||||||| ||||| || || ||||| || |||| ||||| Sbjct 254 AAGCAAAAGATCCAAGACAAAGAAGGAATTCCTCCAGATCAACAACGTCTTATCTTTGCT 313 Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196 || |||||||| ||||||| || ||| | ||||| ||||| ||||||||| | || Sbjct 314 GGTAAACAATTGGAAGATGGACGTACTCTTTCTGATTATAATATCCAAAAAGAAGCAACC 373 Query 25197 CTACATTTAGT 25207 || |||||||| Sbjct 374 CTTCATTTAGT 384 >seq1282 Length=23488 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 25095 AAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGAT 25154 |||||||| |||||| || ||||| || ||||||||||| || | ||||| |||||| Sbjct 1169 AAAGAAGGATGTCCACCAGATCAACAACGAATTATTTTTGCAGGTTATCAATTGGAAGAT 1228 Query 25155 GATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGG 25214 || || | ||||||||| |||||||||||| | || | |||||||| || | Sbjct 1229 ACGCGTACATTATCCGATTACAACATTCAAAAAGAAGCTACCGTCCATTTAGTATTACGA 1288 Query 25215 CTAAGAGGAGGAAATTATTAT 25235 || | ||||||| ||| || Sbjct 1289 CTTCGTGGAGGAATGTATCAT 1309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433279698281990